| Sequence 1: | NP_006363.4 | Gene: | SYNCRIP / 10492 | HGNCID: | 16918 | Length: | 623 | Species: | Homo sapiens |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_595094.1 | Gene: | SPBC660.15 / 2541150 | PomBaseID: | SPBC660.15 | Length: | 474 | Species: | Schizosaccharomyces pombe |
| Alignment Length: | 625 | Identity: | 118/625 - (18%) |
|---|---|---|---|
| Similarity: | 174/625 - (27%) | Gaps: | 274/625 - (43%) |
- Green bases have known domain annotations that are detailed below.
|
Human 67 EFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKT-----------YRQREKQGTKVADSSK-GP 119
Human 120 DEAKIKALLERTG----YTLDVTTGQR------KYGGPPPDSV-YSGQQPSVGT----------- 162
Human 163 -----------------------------------EIFVGKIPRDLFEDELVPLFEKAGPIWDLR 192
Human 193 LMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANN------RLFVGSIP 251
Human 252 KSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN 316
Human 317 VGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDER 381
Human 382 DGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGR 446
Human 447 GRGGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYG-----------------YEDFQVG 494
Human 495 ARG-RGGRGARGAAP---------------SRGRGAA---PPRGRAG------YSQRGGPGSARG 534
Human 535 VRGAR--GGAQQQRGRGVRGARGGRGGNVGGKRKADGYNQ 572 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| SYNCRIP | NP_006363.4 | NURR_hnRNPQ | 23..107 | CDD:410954 | 9/50 (18%) |
| hnRNP-R-Q | 103..615 | CDD:273732 | 109/578 (19%) | ||
| Interaction with APOBEC1 | 400..561 | 43/204 (21%) | |||
| 8 X 3 AA repeats of R-G-G | 448..559 | 35/154 (23%) | |||
| 3 X 4 AA repeats of Y-Y-G-Y | 460..488 | 8/44 (18%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 497..623 | 31/103 (30%) | |||
| Interaction with SMN. /evidence=ECO:0000269|PubMed:11574476 | 518..549 | 11/38 (29%) | |||
| Bipartite nuclear localization signal. /evidence=ECO:0000255 | 564..578 | 1/9 (11%) | |||
| SPBC660.15 | NP_595094.1 | RRM1_Hrp1p | 165..240 | CDD:241021 | 22/77 (29%) |
| RRM2_Hrp1p | 248..322 | CDD:240776 | 25/169 (15%) |
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 0 | 0.000 | Not matched by this tool. | |||
| Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 0 | 0.000 | Not matched by this tool. | |||
| Phylome | 1 | 0.910 | - | - | ||
| RoundUp | 0 | 0.000 | Not matched by this tool. | |||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 1 | 0.910 | |||||