Protein Alignment SYNCRIP and pab2

DIOPT Version :9

• Sequence 1: NP_006363.4
• Gene: SYNCRIP / 10492
• HGNCID: 16918
• Length: 623
• Species: Homo sapiens
• Sequence 2: NP_595794.1
• Gene: pab2 / 2539733
• PomBaseID: SPBC16E9.12c
• Length: 166
• Species: Schizosaccharomyces pombe
• Identity: / - (0%)
• Similarity: / - (0%)
• Gaps: / - (0%)

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SYNCRIP	NP_006363.4	NURR_hnRNPQ	23..107	CDD:410954
		hnRNP-R-Q	103..615	CDD:273732
		Interaction with APOBEC1	400..561
		8 X 3 AA repeats of R-G-G	448..559
		3 X 4 AA repeats of Y-Y-G-Y	460..488
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	497..623
		Interaction with SMN. /evidence=ECO:0000269|PubMed:11574476	518..549
		Bipartite nuclear localization signal. /evidence=ECO:0000255	564..578
pab2	NP_595794.1	RRM	1..>138	CDD:223796
		bZIP	<8..47	CDD:304365
		RRM_II_PABPs	56..128	CDD:240752

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910