DRSC/TRiP Functional Genomics Resources

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Protein Alignment VTI1B and Vti1b

DIOPT Version :10

Sequence 1:NP_006361.1 Gene:VTI1B / 10490 HGNCID:17793 Length:232 Species:Homo sapiens
Sequence 2:NP_001138075.1 Gene:Vti1b / 42215 FlyBaseID:FBgn0264751 Length:122 Species:Drosophila melanogaster


Alignment Length:119 Identity:51/119 - (42%)
Similarity:78/119 - (65%) Gaps:0/119 - (0%)


- Green bases have known domain annotations that are detailed below.


Human   110 MKYGIYAVENEHMNRLQSQRAMLLQGTESLNRATQSIERSHRIATETDQIGSEIIEELGEQRDQL 174
            |.|..|:......::.:.|..:.....:.|.|.|.||:||::||.||:.:|:|::.||||||:.|
  Fly     1 MSYAGYSQLPSGSDQERRQAQLAASTYDVLQRTTDSIQRSNQIAIETENMGAEVLGELGEQRESL 65

Human   175 ERTKSRLVNTSENLSKSRKILRSMSRKVTTNKLLLSIIILLELAILGGLVYYKF 228
            .||..||.:..::|||||.|:|.:||:|..||::|.:||:||:.||.||:..||
  Fly    66 LRTTRRLEDADQDLSKSRVIIRKLSREVLYNKIILILIIILEVGILVGLLVLKF 119

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VTI1BNP_006361.1 Interaction with CLINT1. /evidence=ECO:0000269|PubMed:18033301, ECO:0007744|PDB:2V8S 2..23
V-SNARE 18..96 CDD:461516
Interaction with CLINT1. /evidence=ECO:0000269|PubMed:18033301, ECO:0007744|PDB:2V8S 69..73
SNARE_Vti1b 136..197 CDD:277243 30/60 (50%)
Vti1bNP_001138075.1 SNARE_Vti1b 27..88 CDD:277243 30/60 (50%)
Blue background indicates that the domain is not in the aligned region.

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