Sequence 1: | NP_006353.2 | Gene: | NXF1 / 10482 | HGNCID: | 8071 | Length: | 619 | Species: | Homo sapiens |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_524660.1 | Gene: | sbr / 43944 | FlyBaseID: | FBgn0003321 | Length: | 672 | Species: | Drosophila melanogaster |
Alignment Length: | 703 | Identity: | 220/703 - (31%) |
---|---|---|---|
Similarity: | 338/703 - (48%) | Gaps: | 139/703 - (19%) |
- Green bases have known domain annotations that are detailed below.
Human 23 KKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVAMSDAQ-----DGPRVRYNP-------- 74
Human 75 -YTTRPN--RRGDTWHD--------RDRIHVTVRRDRAPPERGGAGTSQDGTSKNWFKITIPYGR 128
Human 129 KYDKAWLLSMIQSKCSVP--FTPIEFHYENTRAQFFVEDASTASALKAV--------NYKILDRE 183
Human 184 NRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLN 248
Human 249 RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK 313
Human 314 GLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPTTLPPCKGSYF 378
Human 379 ----GTENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDS 439
Human 440 RNVKK-LKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVD 503
Human 504 GKSRD-------SLRAFTRTFIAVPASNSGLCIVNDELFVRNASSE---EIQRAFAMPAP--TPS 556
Human 557 SS--------------------------PVPTLSPE----------------------------- 566
Human 567 QQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVAFMK 619 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
NXF1 | NP_006353.2 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1..85 | 20/77 (26%) | |
RNA-binding (RBD) | 2..118 | 32/118 (27%) | |||
Minor non-specific RNA-binding | 2..60 | 11/36 (31%) | |||
Major non-specific RNA-binding | 61..118 | 21/80 (26%) | |||
Nuclear localization signal | 67..100 | 14/51 (27%) | |||
Nuclear export signal | 83..110 | 10/34 (29%) | |||
Tap-RNA_bind | 116..198 | CDD:401194 | 21/91 (23%) | ||
noncanonical RNP-type RNA-binding (RBD) domain | 121..198 | 19/86 (22%) | |||
leucine-rich repeat (LRR) domains | 199..371 | 60/171 (35%) | |||
LRR | <200..>327 | CDD:227223 | 44/126 (35%) | ||
leucine-rich repeat | 224..266 | CDD:275382 | 15/41 (37%) | ||
LRR_8 | 265..327 | CDD:404697 | 21/61 (34%) | ||
leucine-rich repeat | 267..292 | CDD:275382 | 5/24 (21%) | ||
leucine-rich repeat | 293..316 | CDD:275382 | 8/22 (36%) | ||
leucine-rich repeat | 317..347 | CDD:275382 | 9/29 (31%) | ||
NTF2 | 382..538 | CDD:238403 | 63/163 (39%) | ||
TAP_C | 556..618 | CDD:197882 | 27/116 (23%) | ||
sbr | NP_524660.1 | Tap-RNA_bind | 112..191 | CDD:286271 | 19/87 (22%) |
leucine-rich repeat | 215..255 | CDD:275382 | 15/41 (37%) | ||
LRR_RI | <223..341 | CDD:238064 | 40/119 (34%) | ||
LRR_8 | 256..315 | CDD:290566 | 19/58 (33%) | ||
LRR_4 | 256..298 | CDD:289563 | 14/41 (34%) | ||
leucine-rich repeat | 256..281 | CDD:275382 | 5/24 (21%) | ||
leucine-rich repeat | 282..305 | CDD:275382 | 8/22 (36%) | ||
leucine-rich repeat | 306..336 | CDD:275382 | 9/29 (31%) | ||
NTF2 | 372..531 | CDD:238403 | 65/166 (39%) | ||
Big_3_5 | <578..>614 | CDD:293246 | 4/35 (11%) | ||
TAP_C | 609..671 | CDD:197882 | 21/61 (34%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 114 | 1.000 | Domainoid score | I6066 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H38176 | |
Inparanoid | 1 | 1.050 | 277 | 1.000 | Inparanoid score | I2942 |
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D1051093at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000862 | |
OrthoInspector | 1 | 1.000 | - | - | otm41330 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_102057 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR10662 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R710 |
SonicParanoid | 1 | 1.000 | - | - | X1267 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 1 | 0.960 | - | - | ||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
14 | 13.960 |