DRSC/TRiP Functional Genomics Resources

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Protein Alignment HOXB13 and bap

DIOPT Version :10

Sequence 1:NP_006352.2 Gene:HOXB13 / 10481 HGNCID:5112 Length:284 Species:Homo sapiens
Sequence 2:NP_732637.1 Gene:bap / 42537 FlyBaseID:FBgn0004862 Length:382 Species:Drosophila melanogaster


Alignment Length:151 Identity:38/151 - (25%)
Similarity:65/151 - (43%) Gaps:15/151 - (9%)


- Green bases have known domain annotations that are detailed below.


Human   134 PGTYQPMASYLDVSVV---------QTLGAPGEPRHDSLLPVDSYQSWALAGGWNSQMCCQGEQN 189
            |...|| ::||.....         |..|.......|.:....:|....||...:.:.|...:.:
  Fly    86 PSARQP-SNYLQYYAAAMDNNNHHHQATGTSNSSAADYMQRKLAYFGSTLAAPLDMRRCTSNDSD 149

Human   190 PPGPFWKAAFADSSGQHP--PDACAFRRGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAA 252
            ...|   ...:.|..:.|  .|.....|.::.|..:|..|:.||||.:|..::::..:|.:::.:
  Fly   150 CDSP---PPLSSSPSESPLSHDGSGLSRKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKS 211

Human   253 TSLSERQITIWFQNRRVKEKK 273
            ..|:|.|:.|||||||.|.|:
  Fly   212 LRLTETQVKIWFQNRRYKTKR 232

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HOXB13NP_006352.2 HoxA13_N 12..123 CDD:463521
Homeodomain 217..273 CDD:459649 20/55 (36%)
Interaction with DNA. /evidence=ECO:0000305|PubMed:28473536, ECO:0000305|Ref.8 217..246 8/28 (29%)
Interaction with 5-mCpG DNA. /evidence=ECO:0000305|PubMed:28473536 258..269 7/10 (70%)
Interaction with DNA. /evidence=ECO:0000305|PubMed:28473536, ECO:0000305|Ref.8 270..273 1/2 (50%)
bapNP_732637.1 Homeodomain 176..232 CDD:459649 20/55 (36%)
Blue background indicates that the domain is not in the aligned region.

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