DRSC/TRiP Functional Genomics Resources

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Protein Alignment HOXB13 and bsh

DIOPT Version :10

Sequence 1:NP_006352.2 Gene:HOXB13 / 10481 HGNCID:5112 Length:284 Species:Homo sapiens
Sequence 2:NP_477350.2 Gene:bsh / 35266 FlyBaseID:FBgn0000529 Length:429 Species:Drosophila melanogaster


Alignment Length:312 Identity:77/312 - (24%)
Similarity:114/312 - (36%) Gaps:67/312 - (21%)


- Green bases have known domain annotations that are detailed below.


Human    10 DGAKDIEGLLGAGGGRNLVAHSPLTSHPAAPTLMPAVNY--APLDLPGSAEPPKQCHPCPGVPQG 72
            :.:.|..|:     ..|...::|.:|..|..:...|..:  .|...|.....|.|.|| |.....
  Fly    61 NNSSDTNGI-----AANTNNYAPKSSRNAVKSARSAFAHDNNPHKHPSQHSHPPQSHP-PASASA 119

Human    73 TSPA-----PVPYGYFGGGY-----------YSCRVSRSSLKPCAQAATLAAYPAETPTAGEEYP 121
            ::.|     ....||.|..|           :..|...|.......:..|.:..|:.|......|
  Fly   120 SATATARSNQAASGYAGEDYGKSMHSTPRSNHHSRHGTSHYNGDQISQQLGSGAAQHPPVPTTQP 184

Human   122 SRPTEFAFYPGYP---------GTYQPMASYLDVSVVQ-TLG--APGEPRHDSLLPVDSYQSWAL 174
            ..|      |..|         |...|.|.|.|...:| |||  :|....:.|:.|....|: :|
  Fly   185 QPP------PPPPLNGGSGASNGVLYPNAPYTDHGFLQMTLGYLSPSSGTYKSVDPYFLSQA-SL 242

Human   175 AGGWNSQMCCQGEQNPPGPFWKA-------AFADSSGQHPPDACAFRRGRKKRIPYSKGQLRELE 232
            .||              .||:.|       |.....|.:....|   |.||.|..:|..||..||
  Fly   243 FGG--------------APFFGAPGCVPELALGLGMGVNALRHC---RRRKARTVFSDPQLSGLE 290

Human   233 REYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKVLAKVKNSATP 284
            :.:...::::..:|.:::.|..|||.|:..||||||:|.||.|.:..|:..|
  Fly   291 KRFEGQRYLSTPERVELATALGLSETQVKTWFQNRRMKHKKQLRRRDNANEP 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HOXB13NP_006352.2 HoxA13_N 12..123 CDD:463521 25/128 (20%)
Homeodomain 217..273 CDD:459649 21/55 (38%)
Interaction with DNA. /evidence=ECO:0000305|PubMed:28473536, ECO:0000305|Ref.8 217..246 8/28 (29%)
Interaction with 5-mCpG DNA. /evidence=ECO:0000305|PubMed:28473536 258..269 6/10 (60%)
Interaction with DNA. /evidence=ECO:0000305|PubMed:28473536, ECO:0000305|Ref.8 270..273 1/2 (50%)
bshNP_477350.2 Homeodomain 275..331 CDD:459649 21/55 (38%)

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