DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LRRN2 and caps

DIOPT Version :9

Sequence 1:NP_006329.2 Gene:LRRN2 / 10446 HGNCID:16914 Length:713 Species:Homo sapiens
Sequence 2:NP_001303391.1 Gene:caps / 39493 FlyBaseID:FBgn0023095 Length:811 Species:Drosophila melanogaster


Alignment Length:680 Identity:172/680 - (25%)
Similarity:276/680 - (40%) Gaps:136/680 - (20%)


- Green bases have known domain annotations that are detailed below.


Human    18 AAVPVVPWHVPCPPQCACQIRPWYTPRSSYREATTVDCNDLFLTAVPPALPAGTQTLLLQSNSIV 82
            |.:||......||..|.|.           .:...|:|.:..|..:|.||....|.|::::|.:.
  Fly    32 ATLPVALGLANCPNGCECD-----------DDTLMVNCGEGTLDVLPIALNPAIQRLVIKNNKLK 85

Human    83 RVDQSELGYLANLTELDLSQNSFSD-----ARDCDFHALPQLLSLHLEENQLTRLEDHSFAGLAS 142
            .:| |.:.:.|.||.|||   ||:|     .|...:||  :|..|||:.|::.::.:.:|.||::
  Fly    86 TID-SSMQFYAQLTFLDL---SFNDMLTIPERSFAYHA--KLQELHLDHNKIGQVSNKTFLGLST 144

Human   143 ------------------------LQELYLNHNQLYRIAPRAFSGLSNLLRLHLNSNLLRAIDSR 183
                                    |.||.|..|::..|.|.|..||.||..|:|:.|.|..:...
  Fly   145 ISVLNLRGNLIAELEYRTFSPMVKLAELNLGQNRISHIDPHALDGLDNLRVLYLDDNTLTTVPGE 209

Human   184 -WFEMLPNLEILMIGGNKVDAILDMNFRPLANLRSLVLAGMNLREISDYALEGLQSLESLSFYDN 247
             .|:.|.:|..|.:|.|....|....|:.|..|..|.|.|..|..||..||:||.||..|...||
  Fly   210 LTFQALHSLAELYLGTNSFMTIPGGAFQDLKGLTRLDLRGAGLHNISGDALKGLVSLRFLDLSDN 274

Human   248 QLARVPRRALEQVPGLKFLDLNKNPLQRVGPGDFANMLHLKELGLNNMEELVSIDKFALVNLPEL 312
            :|..:|..|.:::..|:.|::.:|..:.:..|.|:.:..|:.|.|...:.|..::..|......|
  Fly   275 RLPAIPTAAFQRLGRLEQLNIGQNDFEVISSGAFSGLRELRHLELTGAQRLRRVESGAFSGNTNL 339

Human   313 TKLDITNNPRLSFIHPRAFHHLPQMETLMLNNNALSALHQQTVESLPNLQEVGLHGNPIRCDCVI 377
            ..|::::|.:|:.:...|...||.:.|::|..|.||:|.:..| ...:||.:.|..||..|||.:
  Fly   340 EHLNLSSNKQLNELSSIALGGLPHLSTVVLKANQLSSLDEGLV-PWADLQTLDLSENPFECDCRL 403

Human   378 RW-------ANATGTRVRFIEPQSTLCAEPPDLQRLPVREVPFREMTDHCLPLISPRSFPPSLQV 435
            .|       .||:|      :....:||.|..|     |::|...:.:   ||:.......|.|.
  Fly   404 LWLRHLLVSRNASG------QYAPVICAYPTAL-----RDLPLAHLAE---PLLGCAHGAASKQA 454

Human   436 ASGESMVLHCRALAEPEPEIYWVTPAGLR-LTPAHA--GRRYRVYPEGTLELRRVTAEE------ 491
            ..| .:|:.|.||......:.:.....:| :...|:  ||:.|.|.      :..:.||      
  Fly   455 IIG-ILVVACAALITTLALVLYTCRHRIREMLKGHSALGRKEREYQ------KTFSDEEYMSRPP 512

Human   492 ---------AGLYTCVAQNLVGADTKTVSVVVGRALLQP-----GRDEGQGLELRVQETHPYHIL 542
                     ||.|..:|.|     ::.:.|........|     ||..|.|              
  Fly   513 PGGGGVHPAAGGYPYIAGN-----SRMIPVTELXLEAPPPPQLRGRGGGGG-------------- 558

Human   543 LSWVTPPNTVSTNLTWSSASSLRGQGATALARLPRGTHSYNITRLLQATEYWACLQVAFADAHTQ 607
                  .:|.|..:......|...|.:.:.|:|....:..|..:..||.:..:..::    .|:|
  Fly   559 ------ASTASGAVQQLQVPSAVDQASNSFAQLSHIHYMTNNGQQQQAQQQQSTSKM----HHSQ 613

Human   608 -----LACVWARTKEATSCHRALGDRPGLI 632
                 |||...:...|||..|   .||.::
  Fly   614 QDMRLLACNGGKPLNATSLPR---HRPPVV 640

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LRRN2NP_006329.2 leucine-rich repeat 51..69 CDD:275380 6/17 (35%)
LRR_RI 62..288 CDD:238064 77/255 (30%)
LRR 1 70..91 5/20 (25%)
leucine-rich repeat 71..94 CDD:275380 5/22 (23%)
LRR 2 94..115 9/25 (36%)
leucine-rich repeat 95..118 CDD:275380 11/27 (41%)
LRR_8 117..177 CDD:290566 23/83 (28%)
LRR 3 118..139 6/20 (30%)
leucine-rich repeat 119..142 CDD:275380 8/22 (36%)
LRR 4 142..163 8/44 (18%)
leucine-rich repeat 143..166 CDD:275380 10/22 (45%)
LRR_8 165..222 CDD:290566 18/57 (32%)
LRR 5 166..187 7/21 (33%)
leucine-rich repeat 167..190 CDD:275380 7/23 (30%)
LRR 6 190..211 6/20 (30%)
leucine-rich repeat 191..214 CDD:275380 7/22 (32%)
LRR_RI 209..>372 CDD:238064 50/162 (31%)
LRR_8 214..273 CDD:290566 22/58 (38%)
LRR 7 214..235 9/20 (45%)
leucine-rich repeat 215..238 CDD:275380 11/22 (50%)
LRR 8 238..259 8/20 (40%)
leucine-rich repeat 239..262 CDD:275380 7/22 (32%)
LRR 9 262..283 5/20 (25%)
leucine-rich repeat 263..286 CDD:275380 5/22 (23%)
LRR 10 286..305 4/18 (22%)
leucine-rich repeat 287..311 CDD:275380 5/23 (22%)
LRR_8 310..371 CDD:290566 18/60 (30%)
LRR 11 311..333 5/21 (24%)
leucine-rich repeat 312..334 CDD:275380 5/21 (24%)
LRR 12 336..357 7/20 (35%)
leucine-rich repeat 337..360 CDD:275378 7/22 (32%)
leucine-rich repeat 361..373 CDD:275378 5/11 (45%)
TPKR_C2 369..412 CDD:301599 14/49 (29%)
I-set 430..514 CDD:254352 21/101 (21%)
Ig 438..514 CDD:299845 19/93 (20%)
capsNP_001303391.1 leucine-rich repeat 75..96 CDD:275380 5/21 (24%)
LRR_8 96..155 CDD:290566 19/63 (30%)
leucine-rich repeat 97..120 CDD:275380 11/27 (41%)
leucine-rich repeat 121..144 CDD:275380 8/22 (36%)
LRR_8 143..201 CDD:290566 14/57 (25%)
leucine-rich repeat 145..168 CDD:275380 0/22 (0%)
LRR_RI 147..397 CDD:238064 72/250 (29%)
leucine-rich repeat 169..192 CDD:275380 10/22 (45%)
leucine-rich repeat 193..217 CDD:275380 7/23 (30%)
LRR_8 217..276 CDD:290566 23/58 (40%)
leucine-rich repeat 218..241 CDD:275380 7/22 (32%)
leucine-rich repeat 242..265 CDD:275380 11/22 (50%)
LRR_8 265..321 CDD:290566 16/55 (29%)
leucine-rich repeat 266..289 CDD:275380 7/22 (32%)
leucine-rich repeat 290..313 CDD:275380 5/22 (23%)
LRR_8 312..374 CDD:290566 15/61 (25%)
leucine-rich repeat 314..335 CDD:275380 5/20 (25%)
leucine-rich repeat 339..363 CDD:275380 6/23 (26%)
LRRCT 395..445 CDD:214507 17/63 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H21274
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8524
orthoMCL 1 0.900 - - OOG6_103993
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5661
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
54.840

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