DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RBM14 and SGN1

DIOPT Version :9

Sequence 1:NP_006319.1 Gene:RBM14 / 10432 HGNCID:14219 Length:669 Species:Homo sapiens
Sequence 2:NP_012266.1 Gene:SGN1 / 854817 SGDID:S000001440 Length:250 Species:Saccharomyces cerevisiae


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RBM14NP_006319.1 RRM1_CoAA 1..71 CDD:241052
PABP-1234 <3..280 CDD:130689
RRM2_CoAA 79..146 CDD:241053
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 147..175
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 193..232
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 284..303
TRBP-interacting domain, interaction with STIL. /evidence=ECO:0000269|PubMed:25385835 307..354
PRK13875 <319..433 CDD:237537
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 566..590
SGN1NP_012266.1 RRM <16..248 CDD:223796
RRM_II_PABPs 65..137 CDD:409747
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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