DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RACK1 and Rack1

DIOPT Version :10

Sequence 1:NP_006089.1 Gene:RACK1 / 10399 HGNCID:4399 Length:317 Species:Homo sapiens
Sequence 2:NP_477269.1 Gene:Rack1 / 34070 FlyBaseID:FBgn0020618 Length:318 Species:Drosophila melanogaster


Alignment Length:315 Identity:243/315 - (77%)
Similarity:275/315 - (87%) Gaps:1/315 - (0%)


- Green bases have known domain annotations that are detailed below.


Human     1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDE-TNYGIPQRALRGHSH 64
            |:|.:.|||||.|||||||||||.|:.||.|:|||||||:|:||||||| ||||.||:.|.||||
  Fly     1 MSETLQLRGTLIGHNGWVTQIATNPKDPDTIISASRDKTLIVWKLTRDEDTNYGYPQKRLYGHSH 65

Human    65 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 129
            |:||||:||||.:|||||||.|||||||..|.|||||.||||||||||||:||||||||||||||
  Fly    66 FISDVVLSSDGNYALSGSWDQTLRLWDLAAGKTTRRFEGHTKDVLSVAFSADNRQIVSGSRDKTI 130

Human   130 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY 194
            ||||||..||:|:|::.|::||||||||||.|||||||||||:.||||||||||||.||.||.||
  Fly   131 KLWNTLAECKFTIQEDGHTDWVSCVRFSPNHSNPIIVSCGWDRTVKVWNLANCKLKNNHHGHNGY 195

Human   195 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIW 259
            |||||||||||||.|||||.:|:|||||:||:||||:..||||||||||||||||.|.|||||||
  Fly   196 LNTVTVSPDGSLCTSGGKDSKALLWDLNDGKNLYTLEHNDIINALCFSPNRYWLCVAYGPSIKIW 260

Human   260 DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 314
            ||..|..|:||:.||:|.:|||:.|||.|||||.|||||||||:||.:|||||::
  Fly   261 DLACKKTVEELRPEVVSPTSKADQPQCLSLAWSTDGQTLFAGYSDNTIRVWQVSV 315

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RACK1NP_006089.1 WD40 7..311 CDD:238121 238/304 (78%)
WD 1 13..44 23/30 (77%)
WD40 repeat 18..61 CDD:293791 32/43 (74%)
WD 2 61..91 24/29 (83%)
WD40 repeat 67..103 CDD:293791 28/35 (80%)
WD 3 103..133 28/29 (97%)
WD40 repeat 108..144 CDD:293791 30/35 (86%)
WD 4 146..178 25/31 (81%)
WD40 repeat 152..189 CDD:293791 32/36 (89%)
WD 5 190..220 24/29 (83%)
WD40 repeat 195..231 CDD:293791 29/35 (83%)
WD 6 231..260 23/28 (82%)
WD40 repeat 236..279 CDD:293791 31/42 (74%)
WD 7 281..311 22/29 (76%)
WD40 repeat 286..310 CDD:293791 18/23 (78%)
Rack1NP_477269.1 WD40 7..312 CDD:238121 238/304 (78%)
WD40 repeat 18..62 CDD:293791 32/43 (74%)
WD40 repeat 68..104 CDD:293791 28/35 (80%)
WD40 repeat 109..145 CDD:293791 30/35 (86%)
WD40 repeat 153..190 CDD:293791 32/36 (89%)
WD40 repeat 196..232 CDD:293791 29/35 (83%)
WD40 repeat 237..280 CDD:293791 31/42 (74%)
WD40 repeat 287..311 CDD:293791 18/23 (78%)

Return to query results.
Submit another query.