DRSC/TRiP Functional Genomics Resources

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Protein Alignment SCML2 and mbtr-1

DIOPT Version :10

Sequence 1:NP_006080.1 Gene:SCML2 / 10389 HGNCID:10581 Length:700 Species:Homo sapiens
Sequence 2:NP_001122542.1 Gene:mbtr-1 / 171624 WormBaseID:WBGene00021661 Length:564 Species:Caenorhabditis elegans


Alignment Length:231 Identity:66/231 - (28%)
Similarity:102/231 - (44%) Gaps:18/231 - (7%)


- Green bases have known domain annotations that are detailed below.


Human    15 ENQEKTPQSSTSSVQRDDFHWEEYLKETGSISAPSECFRQSQIPPVNDFKVGMKLEARDPRN--A 77
            |:..:..:.| .|..:||..:|:.......|||..          :|..|||.|.|..||.:  .
 Worm   332 EHSRRIAEGS-GSYHKDDVTFEQLFAGKPDISAEK----------LNLLKVGQKFELLDPLSDLR 385

Human    78 TSVCIATVIGI--TGARLRLRLDGSDNRNDFWRL-VDSPDIQPVGTCEKEGDLLQPPLGYQMNTS 139
            .|.|:||:..|  |...|.:..|.:::.::.:.: :|:..:.|||..||.|..|....|.:....
 Worm   386 QSFCVATIRKICKTPGFLIISPDETESDDESFPIHIDNHFMHPVGYAEKFGIKLDRLAGTEPGKF 450

Human   140 SWPMFLLKTLNGSEMASATLFKKEPPKPPLNNFKVGMKLEAIDKKNPYLICPATIGDVKGDEVHI 204
            .|..:|.:  ..:|.....:.:..|.|...:.|:.|..|||:.:...|.|.||::.:|.|..|.|
 Worm   451 KWEGYLKE--KQAEKIPDEMLRPLPSKERRHMFEFGRVLEAVGQNETYWISPASVEEVHGRTVLI 513

Human   205 TFDGWSGAFDYWCKYDSRDIFPAGWCRLTGDVLQPP 240
            .|.||...|......||.|:.|||||......|:.|
 Worm   514 EFQGWDSEFSELYDMDSHDLLPAGWCEFFNFKLRHP 549

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SCML2NP_006080.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..33 4/17 (24%)
MBT 33..162 CDD:459242 32/133 (24%)
MBT 1 33..131 28/102 (27%)
MBT 2 139..240 31/100 (31%)
MBT_SCML2_rpt2 167..243 CDD:439099 27/74 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 253..320
RBR 277..324 CDD:465382
SLED 356..465 CDD:463469
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 466..550
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 575..594
SAM_Scm 625..696 CDD:188977
mbtr-1NP_001122542.1 MBT 96..>164 CDD:459242
MBT 217..326 CDD:214723
MBT_dSfmbt-like_rpt3 369..460 CDD:439089 26/92 (28%)
MBT 479..549 CDD:459242 26/69 (38%)
Blue background indicates that the domain is not in the aligned region.

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