DRSC/TRiP Functional Genomics Resources

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Protein Alignment HMG20B and Ssrp

DIOPT Version :10

Sequence 1:NP_006330.2 Gene:HMG20B / 10362 HGNCID:5002 Length:317 Species:Homo sapiens
Sequence 2:NP_523830.2 Gene:Ssrp / 37767 FlyBaseID:FBgn0010278 Length:723 Species:Drosophila melanogaster


Alignment Length:179 Identity:55/179 - (30%)
Similarity:81/179 - (45%) Gaps:19/179 - (10%)


- Green bases have known domain annotations that are detailed below.


Human    12 AAPAGGKAPGQHGGFVVTVKQERGEGPRAGEKGSHEEEPVKKRGWPKGKKRKKILPNGPKAPVTG 76
            |:..||.:.|     ....|:::.|.....||...|:|..||   |..||:..   ..||...|.
  Fly   508 ASGGGGDSDG-----AKKKKEKKSEKKEKKEKKHKEKERTKK---PSKKKKDS---GKPKRATTA 561

Human    77 YVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSE 141
            ::.:||:.||.|:..:|.:...||.|..|..|.:|:  :|.::.|.|.::||:|..|:|.|:...
  Fly   562 FMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKELK--DKSKWEDAAAKDKQRYHDEMRNYKPEA 624

Human   142 AYKMCTEK--IQEKKIKKEDSSSGLMNTLLNGHKG----GDCDGFSTFD 184
            ......||  ...||.|.|.|.|...||..:|.|.    .|.|..|:.|
  Fly   625 GGDSDNEKGGKSSKKRKTEPSPSKKANTSGSGFKSKEYISDDDSTSSDD 673

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HMG20BNP_006330.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..71 15/58 (26%)
HMG-box_HMG20B 69..147 CDD:438834 24/77 (31%)
SsrpNP_523830.2 POB3 20..499 CDD:227494
HMG-box_SSRP1-like 557..621 CDD:438810 21/65 (32%)
Blue background indicates that the domain is not in the aligned region.

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