Sequence 1: | XP_011516423.1 | Gene: | LAMC3 / 10319 | HGNCID: | 6494 | Length: | 1581 | Species: | Homo sapiens |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_723870.1 | Gene: | wb / 43946 | FlyBaseID: | FBgn0261563 | Length: | 3375 | Species: | Drosophila melanogaster |
Alignment Length: | 1412 | Identity: | 407/1412 - (28%) |
---|---|---|---|
Similarity: | 567/1412 - (40%) | Gaps: | 408/1412 - (28%) |
- Green bases have known domain annotations that are detailed below.
Human 18 AGAGMGACYDGAGRPQRCLPVFENAAFGRL----------AQAS--HTCG-SPPEDFCPHVGAAG 69
Human 70 AGAHCQRCDAADPQRHHNASYLTDFHSQD--------ESTWWQSPSMAFGVQYPTSVNITLRLGK 126
Human 127 AYEITYVRLKFHTS-RPESFAIYKRSRADG----PWEPYQFYSASCQKTY--GRPEGQYLRPGED 184
Human 185 ERVAFCTSEFSDISPLSGGNVAFSTLEGRPSAYNFEESPGLQEWVTSTELLISLDRLNTFG---- 245
Human 246 --DDIFKDPKVLQSYYYAVSDFSVGGRCKCNGHA--SECGPDVAGQLACRCQHNTTGTDCERCLP 306
Human 307 FFQDRPWARGTAEAAHECLPCNCSGRSEECTFDRELFRSTGHGGRCHHCRDHTAGPHCERCQENF 371
Human 372 Y-HWDPRM--PCQPCDCQSAGSLHLQCDDTGTCACKPTVTGWKCDRCLPGFHSLSEGGCRPCTCN 433
Human 434 PAGSLDTCDPRSGRCPCKENVEGNLCDRCRPGTFNLQPHNPAGCSSCFCYGHSKVCAS----TAQ 494
Human 495 FQVHHILSDFHQGAEGWW----ARSVGGSEHPPQWSPNGVLLSPE-DEEEL---TAPEKFLGDQR 551
Human 552 FSYGQ--PLILTFRVPPGD---SPL--PVQLRLEGTGLALSLRHSSLSGPQDAGHPREVELR--- 606
Human 607 -FHLQETSEDVAPPL-----PPFH--------FQRLLANLTSLRLRVSPGPSPAGPVFLTEVRLT 657
Human 658 SARPGL---------SPPASWVEICSCPTGYTGQFCESCAPGYKREMPQGGPY---ASCVPCTCN 710
Human 711 QH-GTCDPNTGIC-VCSHHTEGPSCERCLPGFYGNPFAGQADDCQPCPCP-------GQSACT-- 764
Human 765 -----------TIPESREVVCTHCPPGQRGRRCEVCDDGFFGDPLGLFGHPQP---CHQCQCSGN 815
Human 816 VDPNAVGNCDPLSGHCLRCLHNTTGDHCEHCQEGFYGSALAPRPADKCMPCSCHPQGSVS----- 875
Human 876 ----------------------------------------------------------------- 875
Human 876 ---------------------------------EQMP---------------------------C 880
Human 881 DPVTGQCSCLPHVTARDCSRCYPGFFDLQPGRGCRSCKCHPLGSQEDQCHPKTGQCTCRPGVTGQ 945
Human 946 ACDRCQLGFFGFSIK-----------------------------------------------GCR 963
Human 964 ACRCSPLGAASAQCHE-NGTCVCRPGFEGYKCDRCHDNFF---------LTADGTHCQ------- 1011
Human 1012 ----QCPSCYALVKEEAAKLKARLTLTEGWLQGSDCGSPWGPLDILL----GEAPRGDVYQGHHL 1068
Human 1069 LPGAREAFLEQ---------------MMSLEGAVKAARE--QLQRLN 1098 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
LAMC3 | XP_011516423.1 | Laminin_N | 44..269 | CDD:278484 | 72/258 (28%) |
EGF_Lam | 270..317 | CDD:238012 | 25/48 (52%) | ||
Laminin_EGF | 327..383 | CDD:278482 | 22/58 (38%) | ||
EGF_Lam | 382..428 | CDD:238012 | 14/45 (31%) | ||
Laminin_EGF | 430..477 | CDD:278482 | 21/46 (46%) | ||
Laminin_B | 541..662 | CDD:278481 | 34/144 (24%) | ||
EGF_Lam | 706..753 | CDD:238012 | 24/48 (50%) | ||
EGF_Lam | 754..802 | CDD:238012 | 21/67 (31%) | ||
Laminin_EGF | 810..857 | CDD:278482 | 17/46 (37%) | ||
EGF_Lam | 865..915 | CDD:238012 | 27/179 (15%) | ||
Laminin_EGF | 917..965 | CDD:278482 | 27/94 (29%) | ||
EGF_Lam | 964..1011 | CDD:238012 | 18/56 (32%) | ||
PspA_IM30 | 1191..1426 | CDD:281941 | |||
ATP-synt_B | <1360..1453 | CDD:304375 | |||
wb | NP_723870.1 | Laminin_N | 164..396 | CDD:278484 | 69/242 (29%) |
EGF_Lam | 401..450 | CDD:238012 | 26/54 (48%) | ||
TNFRSF | <407..507 | CDD:304602 | 45/110 (41%) | ||
EGF_Lam | 505..552 | CDD:238012 | 16/49 (33%) | ||
Laminin_EGF | 550..597 | CDD:278482 | 21/46 (46%) | ||
Laminin_B | 660..798 | CDD:278481 | 34/149 (23%) | ||
EGF_Lam | 851..900 | CDD:238012 | 24/48 (50%) | ||
Laminin_EGF | <943..971 | CDD:278482 | 15/33 (45%) | ||
VSP | 953..1414 | CDD:146106 | 122/485 (25%) | ||
Laminin_EGF | 974..1018 | CDD:278482 | 20/55 (36%) | ||
EGF_Lam | 1017..1065 | CDD:238012 | 7/47 (15%) | ||
Laminin_EGF | 1065..>1105 | CDD:278482 | 0/39 (0%) | ||
EGF_Lam | 1150..1197 | CDD:238012 | 18/46 (39%) | ||
Laminin_EGF | 1199..1247 | CDD:278482 | 24/47 (51%) | ||
EGF_Lam | 1247..1292 | CDD:238012 | 1/44 (2%) | ||
Laminin_EGF | 1294..1342 | CDD:278482 | 16/47 (34%) | ||
Laminin_EGF | 1340..1392 | CDD:278482 | 13/58 (22%) | ||
Laminin_B | 1486..1611 | CDD:278481 | |||
EGF_Lam | 1669..1716 | CDD:238012 | |||
Laminin_EGF | 1718..1767 | CDD:278482 | |||
EGF_Lam | 1772..1819 | CDD:238012 | |||
CrfC | <1933..2267 | CDD:223771 | |||
Laminin_II | 2277..2400 | CDD:283628 | |||
LamG | 2399..>2492 | CDD:304605 | |||
Laminin_G_2 | 2616..2755 | CDD:280389 | |||
Laminin_G_2 | 2804..2944 | CDD:280389 | |||
Laminin_G_2 | 3038..3169 | CDD:280389 | |||
LamG | 3192..3347 | CDD:238058 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG1836 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |