DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TRAIP and nopo

DIOPT Version :9

Sequence 1:NP_005870.2 Gene:TRAIP / 10293 HGNCID:30764 Length:469 Species:Homo sapiens
Sequence 2:NP_611305.1 Gene:nopo / 37083 FlyBaseID:FBgn0034314 Length:435 Species:Drosophila melanogaster


Alignment Length:452 Identity:117/452 - (25%)
Similarity:200/452 - (44%) Gaps:97/452 - (21%)


- Green bases have known domain annotations that are detailed below.


Human     7 CTICSDFFDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCRIQVGKRTIINKLFFDLAQEEE 71
            |.||::.|..:.:|.|..|||.||..||.||.:.  |:||||||.:...|.|. :::|:||..:.
  Fly     6 CVICAELFGQADEVFATVCGHMFHHNCLNQWLDR--SKTCPQCR
NKCTTRNIF-RVYFNLANLDV 67

Human    72 NVLDAEFLKNELDNVRAQLSQKDKEK-RDSQVIIDTLRDTLEERNATVVSLQQALGKAEMLCSTL 135
            :.:|...|:.:|||....:...:||: :|.|.|.| |::|.::...|:..|:|.:.|.:.|.|:.
  Fly    68 SHIDVGSLQEQLDNAMLSMKMVEKERNKDEQQIRD-LKETQKKCLKTIAGLEQKVQKKDFLISSY 131

Human   136 KKQMKYLEQQQDETKQAQEEARRLRSKMKTMEQIELLLQSQRPEVEEMIRDMGVGQSAVEQLAVY 200
            .:|:..|:.........::|.:.|:|::::||.|..:|.:...:.:.::::    ::....||.:
  Fly   132 VEQIGVLKSDAHVVDGLRKENKTLKSQIQSMEGISAILAAGSADADRLLKN----EADPHVLANW 192

Human   201 CVSLKKEYENLK----EARKASGEVADKLRKDLFSSRSKLQTVYSELD------QAKL---ELKS 252
            ..:||:|....:    |.|.....|.:.|||::...| ||:...|.|:      |.||   |.|:
  Fly   193 VSTLKRELRQCESKKTELRNVVKVVQNDLRKEIELKR-KLEERVSHLESDLYQAQEKLQAFENKT 256

Human   253 AQKDLQSA----DKEIMSLKKKLTMLQETLNLPPVASETVDRLVLESPAPVEVNLKLRRPSFRDD 313
            |..|..:|    :..|::||::    :....:.|...|.:.| :.||.:|. :|:|         
  Fly   257 AYLDSPNASCGLNSNILALKRE----ERRTTISPTVKENIKR-IEESTSPY-LNIK--------- 306

Human   314 IDLNATFDVDTPPARPSSSQHGYYE------KLCLEKSH-SPIQDVPKKICKGPRKESQLSLGGQ 371
                             ||..|...      .:.|.||. |||:.|.               ||.
  Fly   307 -----------------SSSVGLAHLLNTKGNIGLAKSKISPIKGVG---------------GGV 339

Human   372 SCAG----EPDEELVGAFPIFVRNAILGQKQPKRPRSESSCSKDVVRTG----FDGLGGRTK 425
            |...    :...:|...:.||        |:|:.....||.|.....||    ::|:||..|
  Fly   340 SMTSGTIRKTSSDLSEKYSIF--------KKPRLLLGSSSSSALTATTGSNFVYNGMGGSEK 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TRAIPNP_005870.2 RING-H2_TRAIP 6..50 CDD:319394 20/42 (48%)
RING-H2 finger (C3H2C3-type) 7..49 CDD:319394 19/41 (46%)
SMC_N <68..>279 CDD:330553 55/228 (24%)
Interaction with CYLD. /evidence=ECO:0000269|PubMed:14676304 211..469 57/247 (23%)
PIP-box. /evidence=ECO:0000269|PubMed:26711499 460..469
nopoNP_611305.1 zf-RING_2 5..47 CDD:290367 20/42 (48%)
zf-rbx1 <5..47 CDD:289448 20/42 (48%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 67 1.000 Domainoid score I9870
eggNOG 1 0.900 - - E1_KOG0827
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 112 1.000 Inparanoid score I4869
Isobase 1 0.950 - 0 Normalized mean entropy S5511
OMA 1 1.010 - - QHG50113
OrthoDB 1 1.010 - - D581741at33208
OrthoFinder 1 1.000 - - FOG0006979
OrthoInspector 1 1.000 - - oto90577
orthoMCL 1 0.900 - - OOG6_107085
Panther 1 1.100 - - LDO PTHR46569
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X4425
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1312.790

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