DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CDKN2A and mlt-3

DIOPT Version :10

Sequence 1:XP_011515977.1 Gene:CDKN2A / 1029 HGNCID:1787 Length:184 Species:Homo sapiens
Sequence 2:NP_502319.2 Gene:mlt-3 / 189743 WormBaseID:WBGene00012704 Length:392 Species:Caenorhabditis elegans


Alignment Length:164 Identity:45/164 - (27%)
Similarity:66/164 - (40%) Gaps:40/164 - (24%)


- Green bases have known domain annotations that are detailed below.


Human     6 GSSMEPSAD--W---LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMMGSAR-VAELLL 64
            |:.::.|.:  |   |..|:|.|.:..||.||..||.|...:...|:.|......... |.:.||
 Worm   102 GAKVDDSTESRWQTPLMMASACGNISVVRLLLGRGANPRLCDKEKRQAIHYASSCCQNVVVDTLL 166

Human    65 LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWG------------------ 111
            ..|.:||.|| :..|.|||:||..|...|.:.|...|..|::::|.|                  
 Worm   167 AAGCDPNAAD-SEGTTPVHEAAMAGHEITFIALLEKGGNLELKNAKGENAAALACDNNKILQLIS 230

Human   112 ---------------RLPVDLAEELGHRDVARYL 130
                           |.|..|:|.|...|::||:
 Worm   231 EHQAEIAKQSSKTGNRGPRRLSELLEEMDLSRYI 264

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CDKN2AXP_011515977.1 ANKYR <16..148 CDD:440430 42/149 (28%)
ANK repeat 16..42 CDD:293786 11/25 (44%)
ANK repeat 44..74 CDD:293786 8/30 (27%)
ANK repeat 76..108 CDD:293786 11/31 (35%)
mlt-3NP_502319.2 ANKYR 38..275 CDD:440430 45/164 (27%)
ANK repeat 78..109 CDD:293786 1/6 (17%)
ANK repeat 111..176 CDD:293786 20/64 (31%)
ANK repeat 178..209 CDD:293786 11/30 (37%)
SAM_1 248..306 CDD:425739 7/17 (41%)

Return to query results.
Submit another query.