DRSC/TRiP Functional Genomics Resources

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Protein Alignment CDKN1C and Cdkn1c

DIOPT Version :10

Sequence 1:NP_000067.1 Gene:CDKN1C / 1028 HGNCID:1786 Length:316 Species:Homo sapiens
Sequence 2:NP_001028929.1 Gene:Cdkn1c / 246060 RGDID:727892 Length:355 Species:Rattus norvegicus


Alignment Length:356 Identity:199/356 - (55%)
Similarity:223/356 - (62%) Gaps:43/356 - (12%)


- Green bases have known domain annotations that are detailed below.


Human     1 MSDASLRSTSTMERLVARGTFPVLVRTSACRSLFGPVDHEELSRELQARLAELNAEDQNRWDYDF 65
            |||..|||.:.||||.:..||||:.|:|||||||||||||||.|||:.||||||||||||||::|
  Rat     3 MSDVYLRSRTAMERLASSDTFPVIARSSACRSLFGPVDHEELGRELRMRLAELNAEDQNRWDFNF 67

Human    66 QQDMPLRGPGRLQWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAVAVAVSP---PLEPAAESLD 127
            |||:||||||||||.||||:|||||||||||||||||.|.|||..|||||.|   |  ||.|..|
  Rat    68 QQDVPLRGPGRLQWMEVDSESVPAFYRETVQVGRCRLQLGPRPPPVAVAVIPRSGP--PAGEGPD 130

Human   128 GLEEAPEQLPSVPV------PAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPAPAP 186
            ||||||||.||.|.      |.|.:||.|...|...|.|...|||...:.|..:..:|.......
  Rat   131 GLEEAPEQPPSAPASAVVAEPTPPATPAPASDLTSDPIPDVTPVATSDSTPDPIPDVATQDGEEQ 195

Human   187 APAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESA------------EQGAN---------- 229
            .|......|:.........|.......|..:...|:.|            ||||.          
  Rat   196 VPEQVSEQVSEQGEESGAEPGDELGAEPVSEQGKQQGAEPVEEKDEEPVEEQGAEPVEEKDEEPV 260

Human   230 QGQRGQ--------EPLADQLHSGISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPE- 285
            :||.|:        :.|.||..|||.||||||||||:||| |||||||||||||||||||:|.| 
  Rat   261 EGQNGELVEEQDENQELKDQPLSGIPGRPAAGTAAANANG-AIKKLSGPLISDFFAKRKRTAQEN 324

Human   286 KSSGDVPAPCPSPSAAPGVGSVEQTPRKRLR 316
            |:|.||||.||||:.|||||:||||||||||
  Rat   325 KASNDVPAGCPSPNVAPGVGAVEQTPRKRLR 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CDKN1CNP_000067.1 CDI 33..79 CDD:460503 39/45 (87%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 124..153 18/34 (53%)
9 X 4 AA repeats of P-A-P-A 156..213 10/56 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 181..260 29/108 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 278..316 29/38 (76%)
Nuclear localization signal. /evidence=ECO:0000255 278..281 2/2 (100%)
Cdkn1cNP_001028929.1 CDI 35..81 CDD:460503 39/45 (87%)
PTZ00341 <165..280 CDD:173534 21/114 (18%)

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