DRSC/TRiP Functional Genomics Resources

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Protein Alignment HNRNPR and shep

DIOPT Version :10

Sequence 1:XP_047280655.1 Gene:HNRNPR / 10236 HGNCID:5047 Length:661 Species:Homo sapiens
Sequence 2:NP_001246636.1 Gene:shep / 38605 FlyBaseID:FBgn0052423 Length:590 Species:Drosophila melanogaster


Alignment Length:476 Identity:88/476 - (18%)
Similarity:140/476 - (29%) Gaps:147/476 - (30%)


- Green bases have known domain annotations that are detailed below.


Human   150 AKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKI-----PRDLYEDELVPL 209
            |...|:.::..|         :|..|.|...|:...|...|......:     |.|.|       
  Fly   131 AAAAAVAQQAAY---------RYTAPLPQPAYAAYTPHTATTPATTTVSFLSQPVDYY------- 179

Human   210 FEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLF 274
                   |..:.:....|..|...:..:..|.::...:..|.::             :..|..:.
  Fly   180 -------WYGQRVPTAASPSNTNSSSSSNTGSQSGTLSTSLSNT-------------TNTNTNMG 224

Human   275 VGSIPKNKTKENILEEFSK----VTGLTEGLVD------------VILYHQPDDKKKN--RGFCF 321
            .....:|:.::. .|:.||    :.||.:|..|            :|......||..|  :|:.|
  Fly   225 PNGTVQNQNQQG-GEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGF 288

Human   322 LEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILE 386
            :::|....|..|.:.|.       |..|..:.|.. :|.||      ..|::.||.....|..||
  Fly   289 VDFEQPAFAECAVKGLQ-------GKGVQAQMAKQ-QEQDP------TNLYIANLPPHFKETDLE 339

Human   387 KSFSEFGKLERVKKLKD-------YAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIV--------- 435
            ...|::|::...:.|:|       ..|...|.|....:.:...||..|.|.:..::         
  Fly   340 AMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPK 404

Human   436 ---LAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYED 497
               |.|.||...:..:.........||:       |.|.       :.|.....|.|        
  Fly   405 KKNLFKTPDPNARAWRDVSAEGIPVAYD-------PTMQ-------QNGVSVNVGTP-------- 447

Human   498 YYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAP--------------PPPRGRGA 548
                 .|..|    ..:..|..|   ||.|      .|.:..|              |......|
  Fly   448 -----IGVPY----SRFSAPQVG---GYPV------AGSQWIPGYMMTQVDDQTSYSPQYMQMAA 494

Human   549 PPPRGRAGYSQRGAPLGPPRG 569
            .||.|...|.........|||
  Fly   495 APPLGVTSYKPEAVNQVQPRG 515

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HNRNPRXP_047280655.1 NURR_hnRNPR 52..135 CDD:410955
hnRNP-R-Q 131..656 CDD:273732 88/476 (18%)
shepNP_001246636.1 RRM_SF 240..321 CDD:473069 20/88 (23%)
RRM2_MSSP 322..400 CDD:409690 17/77 (22%)
Blue background indicates that the domain is not in the aligned region.

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