DRSC/TRiP Functional Genomics Resources

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Protein Alignment HNRNPR and ssx

DIOPT Version :10

Sequence 1:XP_047280655.1 Gene:HNRNPR / 10236 HGNCID:5047 Length:661 Species:Homo sapiens
Sequence 2:NP_569908.1 Gene:ssx / 31086 FlyBaseID:FBgn0024987 Length:485 Species:Drosophila melanogaster


Alignment Length:443 Identity:77/443 - (17%)
Similarity:141/443 - (31%) Gaps:157/443 - (35%)


- Green bases have known domain annotations that are detailed below.


Human   190 TEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSY 254
            |.:.:..:|:|:.:.||..||...|||...::|.|..:|.:.||.|:.:..:..:::|::..:.:
  Fly    93 TNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGF 157

Human   255 EIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGF 319
            .:|            |.||.|.                              |.:|..:.     
  Fly   158 YVR------------NKRLKVS------------------------------YARPGGQS----- 175

Human   320 CFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEI 384
                                                          .|...|:|.||:..:.:::
  Fly   176 ----------------------------------------------IKDTNLYVINLSRNINDDM 194

Human   385 LEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEMNGKEIEG--EEIEIVLAKP 439
            |::.||.:|.:.:...|:|        .|||.:..|..|.:|:..:|....||  :.|.:.||:.
  Fly   195 LDRIFSPYGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEE 259

Human   440 PDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGG------GRGGYGYPPDYYG---Y 495
            ..|.:..:..|:...                     |.|.||      |.||..:||.::.   :
  Fly   260 HGKAKAAQFMAQIGG---------------------GNGGGGGGPPHMGPGGPMHPPHHHNNHHH 303

Human   496 EDYYDDYYGYDYHDYRGGYEDPYY-----------------GYDDGYAVRGRGGGRGGRGAPPPP 543
            .::::.:....:|..:..::.|.:                 .:.:.:............|.|.|.
  Fly   304 NNHHNPHMPPHHHQPQHPHQHPQHHPQLHHMQHHHPNNHNNNHPNNHHHNNNNNNHHNMGGPHPH 368

Human   544 RGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGN 596
            ..:...|.....|       :|...|...|.|.|.....|.|..|..|..|||
  Fly   369 HMQQMHPMGMNMG-------MGVNMGMGMGMGMPIHGGGGGGGGGGGGGGGGN 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HNRNPRXP_047280655.1 NURR_hnRNPR 52..135 CDD:410955
hnRNP-R-Q 131..656 CDD:273732 77/443 (17%)
ssxNP_569908.1 sex-lethal <76..272 CDD:273740 49/271 (18%)
Blue background indicates that the domain is not in the aligned region.

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