DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GPA33 and zig-10

DIOPT Version :9

Sequence 1:NP_005805.1 Gene:GPA33 / 10223 HGNCID:4445 Length:319 Species:Homo sapiens
Sequence 2:NP_001122644.1 Gene:zig-10 / 188896 WormBaseID:WBGene00020800 Length:322 Species:Caenorhabditis elegans


Alignment Length:284 Identity:56/284 - (19%)
Similarity:98/284 - (34%) Gaps:86/284 - (30%)


- Green bases have known domain annotations that are detailed below.


Human    36 GKSVTLPCTYHTSTSSREGLIQW--DKLLLTHTERVVIWPFSNKNYIHGELYKNRVSISNNAEQS 98
            |.:..|.|..:||::     :.|  ||.::...|       .:||.|..| .|.|     ..|:.
 Worm    39 GSTTALECEPYTSSN-----VTWYRDKHVIATVE-------GHKNAILNE-RKPR-----GGEER 85

Human    99 DASI---TIDQLTMADNGTYEC--------------SVSLMSDLEGNTKSRVRLLVLVPPSKPEC 146
            ...|   .|..:...|.|.|.|              .::.:.::..|.|      :.:.|:.|  
 Worm    86 IPEIGFLVIFDVQKEDEGNYYCQRENDSKWGEVFQLKIAYVDEISQNEK------IKLEPNVP-- 142

Human   147 GIEGETIIGNNIQLTCQSKEGSPTPQYSWKRYNILNQEQPLAQPAS------GQPVSLKNISTDT 205
                  .:|.::.|.|...:..|.|:.:|...::     |::..:|      ...:.:.:.|...
 Worm   143 ------TLGRSLVLHCPIPKAYPPPKVTWTVNSL-----PISHISSDYVAFPNGTLIISHFSYHH 196

Human   206 SGYYICTSSNEEGTQFCNITVAVRSPSMNV-------------ALYVGIAVGVVAALIIIG-III 256
            .||:.|..:|..|....|..:..|....|:             ||...:.:.::..||..| ::|
 Worm   197 FGYFECNINNFAGHASTNTFIDSRELVANLESLKPTFVNGCSAALRSSLFMFLLGCLITSGAVLI 261

Human   257 Y--CCCCRGKDDNTEDKEDARPNR 278
            |  |..|..|        ..||.|
 Worm   262 YLICAVCLLK--------PGRPRR 277

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GPA33NP_005805.1 V-set 26..138 CDD:311561 24/120 (20%)
IGc2 154..218 CDD:197706 13/69 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 267..319 3/12 (25%)
zig-10NP_001122644.1 IG_like 31..118 CDD:214653 22/96 (23%)
IGc2 38..111 CDD:197706 22/89 (25%)
IG_like 143..215 CDD:214653 14/76 (18%)
IGc2 145..209 CDD:197706 13/68 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 50 1.000 Inparanoid score I4563
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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