DRSC/TRiP Functional Genomics Resources

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Protein Alignment RNF41 and Traf-like

DIOPT Version :10

Sequence 1:NP_005776.1 Gene:RNF41 / 10193 HGNCID:18401 Length:317 Species:Homo sapiens
Sequence 2:NP_727976.1 Gene:Traf-like / 32611 FlyBaseID:FBgn0030748 Length:474 Species:Drosophila melanogaster


Alignment Length:316 Identity:63/316 - (19%)
Similarity:111/316 - (35%) Gaps:116/316 - (36%)


- Green bases have known domain annotations that are detailed below.


Human    38 FCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSH 102
            |||    :||..|         ....||....:::..        |.|   ||.|.:....:.||
  Fly    43 FCN----EWFDAQ---------TFTEHLIHCGQVLEE--------CPN---GCQAFIPRIRMRSH 83

Human   103 LSDC---EHN------------------PKRPVTCEQGCGL--EMPKDELPNH-NCIKHLRSVVQ 143
            |.:|   :||                  .:|.:..||..|.  .:..:|:... :.|..:.::.:
  Fly    84 LKECPRNQHNLSNQQRMSVSMDRLDRQSDQRLLVIEQDVGTIRSVLNEEIRQRLHLITDVGNIRK 148

Human   144 QQQ-----TRIAELEKTSAEHKHQLAEQ-----------KRDIQ----LLKAYMRAIRS------ 182
            |.|     ||  |.||...:.:.|:.|:           :.|:|    :.::....:.|      
  Fly   149 QNQVVEDWTR--ETEKAMDDLRRQMEEETNRKAFAIEQNQLDVQYCCDITQSLKEQVESRLDEAQ 211

Human   183 ----------------VNPNLQNLEETIEYNE---------ILEWVNSLQPARVTRWGG--MIST 220
                            :|.|:..|||.|..||         |.|::..:.....|:.|.  .:::
  Fly   212 KLVNQLSADVTYHQNQLNDNILKLEELIFENERLNREKFFQIEEFLQQINEDIKTKLGNSDYVTS 276

Human   221 PDAVLQAVIK--RSLV---ESGCPASIVNELIENAHERSWPQGLATLETRQ-MNRR 270
            ..|.|...:|  :::|   |..|     ::|....|:..  |.::.|||:. |.:|
  Fly   277 KQATLDYEVKNVKNIVCETEERC-----DKLDRALHQTM--QNISDLETQMAMQQR 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RNF41NP_005776.1 mRING-HC-C3HC3D_Nrdp1 15..57 CDD:438296 6/18 (33%)
USP8_interact 137..315 CDD:430333 38/193 (20%)
Traf-likeNP_727976.1 SMC_prok_B <131..>336 CDD:274008 40/204 (20%)
MATH_TRAF_C 334..473 CDD:238168
Blue background indicates that the domain is not in the aligned region.

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