DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment amfrb and hrdl-1

DIOPT Version :9

Sequence 1:XP_005169066.1 Gene:amfrb / 101884807 ZFINID:ZDB-GENE-130530-643 Length:459 Species:Danio rerio
Sequence 2:NP_492602.2 Gene:hrdl-1 / 172833 WormBaseID:WBGene00009164 Length:579 Species:Caenorhabditis elegans


Alignment Length:461 Identity:107/461 - (23%)
Similarity:190/461 - (41%) Gaps:94/461 - (20%)


- Green bases have known domain annotations that are detailed below.


Zfish     5 SWPCTQAYTAFS---ACLLTGCIYSLYDDE-DKDLLIEKNLSQDSPSGRTDDDNVNNEELYST-- 63
            |:|...:|.|.|   |.:.:..:::.:..: :...|||:.|.             ||..|.|.  
 Worm    26 SFPSVDSYLALSVLVAIVASVTVFTTFRSQPELQKLIEEELR-------------NNTRLSSAYG 77

Zfish    64 ----GLWCHT---------TGSLCMWVLVNTLCCFLLLMGKCIQLVV---FGDLRINEKQNLKDK 112
                .|..||         :.:..:||.:|:   :..::..|.:|::   |.:|...|:...:..
 Worm    78 LNIEALSGHTFFQIAHYILSDTTLIWVAINS---YFAILAVCTRLIIKLTFKELARQEENVARQA 139

Zfish   113 TWNFLFNKLIFLFGVLNVRTEREMAMWCLCFSALLFLQLLAQLCKDRFEFLSSSPSSTALGSHMH 177
            .:.::...:::|..|:..:....:..|.:......||..|..:...|.:.:|.|...   ||...
 Worm   140 FFCYVLLTIVYLSVVIGPQKGHRVMPWMIWGGICAFLSHLQFITCQRLKHISPSCDR---GSQKI 201

Zfish   178 LLLVLMCLFVSSGGLTIICVLLGFSFGMHTLSF-----MAVECLMVSVYVNHSILRYAIHLYDLM 237
            ..|.|...|||      |.:....|...|.|::     :..:||:       ::.|....|:..:
 Worm   202 SFLSLFLFFVS------IAMTFLISRFQHHLTWQPAVLLYFDCLL-------AVFRSTYILFRCI 253

Zfish   238 CDS---SWEGKEV--FIYY----TDFVMEMGILLLDMMHHINMLLYGNVWFSVADLFILTHIRFL 293
            ..|   |:....|  |.|:    |:||.|    |:.|:....:|.: :...::..:|.|.|::..
 Worm   254 SSSRVFSFNPDSVRHFNYWLELITNFVCE----LIQMLSFAQLLAF-SPGLNLTSIFFLYHMKLT 313

Zfish   294 AKEMQRKLFQHKNYMHIYDVMDTRFSMATMEELASRDDRCVICWEKMYTAYKLPCGHLFHKSCLR 358
            ...|..:|.:|:|:..|::.::..:...   :.|:.|||||:|||.:.|:.:|||.|.||..||.
 Worm   314 YNCMTEQLSRHRNHKKIFEHIERSYPSV---KCANGDDRCVVCWELLGTSRRLPCSHQFHDWCLM 375

Zfish   359 SWLEQNMSCPTCRMSVNMSGGHTGNEQEGALFSLGATDVPSRPPTRYHSQLFHFNGSQIS-NWLP 422
            .||.|:.||||||.::.                 ...|...:||...:|....|||.... ...|
 Worm   376 WWLAQDSSCPTCRCTIP-----------------SPQDQIRQPPEVGNSTRLRFNGGSFGFVHFP 423

Zfish   423 GFSVEV 428
            .|::||
 Worm   424 AFTLEV 429

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
amfrbXP_005169066.1 HRD1 77..>403 CDD:227568 80/342 (23%)
zf-RING_2 331..371 CDD:290367 23/39 (59%)
hrdl-1NP_492602.2 HRD1 <200..>407 CDD:227568 63/244 (26%)
zf-RING_2 348..388 CDD:290367 23/39 (59%)
CUE_AMFR 449..489 CDD:270604
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C161032776
Domainoid 1 1.000 65 1.000 Domainoid score I7252
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 170 1.000 Inparanoid score I3166
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D271732at33208
OrthoFinder 1 1.000 - - FOG0006872
OrthoInspector 1 1.000 - - otm13239
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3836
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
98.900

Return to query results.
Submit another query.