DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RBM6 and CG4887

DIOPT Version :9

Sequence 1:NP_005768.1 Gene:RBM6 / 10180 HGNCID:9903 Length:1123 Species:Homo sapiens
Sequence 2:NP_001259859.1 Gene:CG4887 / 33304 FlyBaseID:FBgn0031318 Length:1004 Species:Drosophila melanogaster


Alignment Length:1251 Identity:258/1251 - (20%)
Similarity:406/1251 - (32%) Gaps:458/1251 - (36%)


- Green bases have known domain annotations that are detailed below.


Human    72 SFSYGARDGPHGDYRGGEGPGHDFR---GGDFSSSDFQSRD--SSQLDFRGRDIHSGDFRDREGP 131
            |||.|:.:      .||.|..: :|   |..:|.|..:||:  .|....|.|:..|.. |||:..
  Fly     8 SFSGGSEN------EGGRGSDY-YRSRPGSRYSRSRSRSRERNRSHGGIRHRNSRSRS-RDRDRS 64

Human   132 PM----DYRGGDG-------------TSMDYRGREAPHMNYRDRDAHAVDFRGRDAPPSDFRGRG 179
            |:    .:|||.|             .:.|||.::  ..||..|.    :|..|     .||...
  Fly    65 PVFRNDQHRGGRGGAGNGDPDLYHSLINDDYRDQD--ERNYNSRS----NFENR-----QFRRHD 118

Human   180 TYDLDFRGRDGSHADFRGRDLSDLDFRAREQSRSDFRNRDVSDLDFRDKDGTQVDFRGRGSGTTD 244
            ::|...|.|||.    ..|:|:|.::..|.:           |||.||:..|             
  Fly   119 SFDRRHRDRDGE----SDRELNDYEYEQRSR-----------DLDSRDRSST------------- 155

Human   245 LDFRDRDTPHSDFRGRHRSRTDQDFRGREMGSCMEFKDREMPPVDPNILDYIQPSTQDREHSGMN 309
                |||..|:..|.|..||                      |.:.|      .:..||..|   
  Fly   156 ----DRDWYHNRSRSREHSR----------------------PWNRN------NNHDDRSRS--- 185

Human   310 VNRREESTHDHTIERPAFGIQKGEFEHSETREGETQGVAFEHESPADFQNSQSPVQDQDKSQLSG 374
             |.|.....||.:      ...|...|:..|:                       :|:|:.|  .
  Fly   186 -NERNTRHRDHRM------YNGGGSNHNRDRD-----------------------RDRDREQ--D 218

Human   375 REEQSSDAGLFKEEGGLDFLGRQDTDYRSMEYRDVDHRLPGSQMFGYGQSKSFPEGKTARDAQRD 439
            ||                    :|.|      ||.|....||..:      ...||...|:..| 
  Fly   219 RE--------------------RDRD------RDRDRERRGSSDY------DSDEGHMRRNKYR- 250

Human   440 LQDQDYRTGPSEEKPSRLIRLSGVPEDATKEEILNAFRTPDGMPVKNLQLKEYNTGYDYGYVCVE 504
                      |..:...:|.:.|:.::.|:.:|::.....:..|.....:::..|....|...||
  Fly   251 ----------STTEALNIIIIFGLTKEMTRADIMSELIKVNMEPACIRIIRKQGTDSSRGIAFVE 305

Human   505 FSLLEDAIGCMEANQGTLMIQDKEVTLEYV-SSLDFWYCKRCKANIGGHRSSCSFCKNPREVTEA 568
            |:.:|:|...|:..||.|.:.|:.|::.|. ..:..|.|.:|.......|..|..||..||    
  Fly   306 FNTVEEAKQWMDITQGVLKLNDERVSMRYSHKRIQDWNCNKCGVCNFKFRFYCFVCKTSRE---- 366

Human   569 KQELITYPQPQKTSIPAPLEKQPNQPLRPADKEPEPRKREEGQESRLGHQKREAERYLPPSRREG 633
                                          |.|.......||.:        |....|       
  Fly   367 ------------------------------DSETTFSSGSEGVD--------EVSTIL------- 386

Human   634 PTFRRDRERESWSGETRQDGESKTIMLKRIYRSTPPEVIVEVLEPYVR---LTTANVRIIKNRTG 695
                                 :|.|||:.:...|..|.::..|:.:::   .|.:.|.|.::...
  Fly   387 ---------------------TKKIMLRNLDALTNEEAVLTALQLHLKDLSKTVSKVLISRDSLT 430

Human   696 PMGHTYGFIDLDSHAEALRVVKILQNLDPPFSIDGKMVAV-----------------NLATGKRR 743
            .......::..|:..:::.|...|..||||.::|.::||:                 .||.....
  Fly   431 QASRGICYLHFDTLVDSMNVHNALTALDPPLTLDDRVVAITYCIDLEEQQALPKNPKELAVKDST 495

Human   744 NDSGDHS--------------------------------DHMHY--YQGKKYFRDRRGGGRNSD- 773
            .:||:.|                                :|.:|  |..:.|..|.....|:|. 
  Fly   496 VNSGNISAVSPSGLGGNYTLADVPRLAEYSASLYASNPAEHAYYVQYYTEYYTADINKNNRDSHL 560

Human   774 ----------WSSDTNRQGQQSSSDC--------------------------------------- 789
                      .|:...:|.:.||.:.                                       
  Fly   561 TEANSGAAVALSAIQRKQKKMSSIETTITAAATAAAQAAAQVKATLAAQVASAPKGNDGKIYPTP 625

Human   790 ----YIYDSATGYYYDPLAGTYYDPNTQ----------------QEVYVPQDP-----GLPEEEE 829
                |.||..:|||||...|.||:.::|                :..||...|     .|.|...
  Fly   626 DVTQYQYDETSGYYYDSTTGLYYNAHSQYYYNNETGAYLYWDQRRSTYVLATPASTQAALQEVLA 690

Human   830 IKEKKPTSQGKSSSKKEMSKRDGKEKKDRGVTRFQENASEGKAPAEDVFKKPLPPTV-------- 886
            ..|:|...:.|.:.:||...:..|.|..:.:.:..|..::.....:|......|..:        
  Fly   691 DAEQKGEEESKKAKEKEGGNKHDKVKVAKKIVKDMEKWAKQLNQKKDYTAVATPQPILANEVATT 755

Human   887 -----------------KKEESP----PPPKVVNPLIGLLGEYGGDSDYEEEEEEEQTPPPQPRT 930
                             |||...    .|...|.|:..|:..|||.||.||:           ..
  Fly   756 SRGNQGGYADVGFSILEKKERGKLNDYAPNPTVGPMNKLVNAYGGTSDSEED-----------NA 809

Human   931 AQPQKREEQTKKEN----EEDKLTDWNKLACLLCRRQFPNKEVLIKHQQLSDLHKQNLEIHRKIK 991
            |..|..:.......    ||....|::||.||||:|.|.:.|:|.||.::|.|||:||   .|:.
  Fly   810 ASSQNTQSSAVVSGGGGAEESDYVDFHKLTCLLCKRAFQSLEILQKHLKMSTLHKENL---AKLN 871

Human   992 QS-----EQELAYLERREREGKFKGRGNDRREKLQSFD--SPERKRIKYSRETDSDRKLVDKE-- 1047
            |:     |:.|||          :.|..:||.|....|  .|.|.|.::.:|.   :.|..::  
  Fly   872 QNTSSSIEEALAY----------RDRAKERRLKYGESDPPPPNRSRERFEQEI---KTLQSRQKQ 923

Human  1048 --------DIDTSSKGGCVQQATGWRKGTGLGYGHPGLASSEEAEGRMRGPSVGASGRTSKRQSN 1104
                    .|.:|:.|..:.|..||.:|.|||..:.|.....||:||..  .||...::.:....
  Fly   924 STSATPAMPISSSNVGSRLLQKMGWSEGQGLGRKNQGRTQIIEADGRSN--YVGLGNKSGQMIPG 986

Human  1105 ETYRDAVRRVMFARYK 1120
            ..|:..::::|..||:
  Fly   987 NDYKSYIKKMMKQRYE 1002

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RBM6NP_005768.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..391 75/340 (22%)
YjbI <92..237 CDD:224276 43/166 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 413..454 7/40 (18%)
RRM1_RBM6 456..533 CDD:240760 18/76 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 574..654 6/79 (8%)
RRM2_RBM6 654..740 CDD:241007 22/105 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 741..787 13/90 (14%)
OCRE_RBM6 766..825 CDD:293882 21/133 (16%)
OCRE repeat 1 772..779 CDD:293882 2/17 (12%)
OCRE repeat 2 788..795 CDD:293882 3/49 (6%)
OCRE repeat 3 796..803 CDD:293882 5/6 (83%)
OCRE repeat 4 804..811 CDD:293882 3/6 (50%)
OCRE repeat 5 814..821 CDD:293882 2/6 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 827..948 28/153 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1004..1106 27/113 (24%)
G_patch 1049..1095 CDD:197727 17/45 (38%)
CG4887NP_001259859.1 DUF1777 115..>196 CDD:285811 32/144 (22%)
RRM_SF 255..335 CDD:302621 18/79 (23%)
ZnF_RBZ 341..364 CDD:197784 7/22 (32%)
RanBP2-type Zn finger 342..361 CDD:275375 5/18 (28%)
RRM1_RRM2_RBM5_like 387..473 CDD:240759 20/85 (24%)
OCRE_RBM5_like 623..678 CDD:293881 14/54 (26%)
OCRE repeat 1 628..635 CDD:293881 3/6 (50%)
OCRE repeat 2 636..643 CDD:293881 5/6 (83%)
OCRE repeat 3 644..651 CDD:293881 3/6 (50%)
OCRE repeat 4 652..659 CDD:293881 1/6 (17%)
OCRE repeat 5 661..668 CDD:293881 0/6 (0%)
G-patch 935..979 CDD:279867 16/45 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165152935
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0154
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D786674at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR13948
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
65.810

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