DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RBM7 and CstF64

DIOPT Version :10

Sequence 1:NP_001272974.1 Gene:RBM7 / 10179 HGNCID:9904 Length:267 Species:Homo sapiens
Sequence 2:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster


Alignment Length:222 Identity:56/222 - (25%)
Similarity:94/222 - (42%) Gaps:41/222 - (18%)


- Green bases have known domain annotations that are detailed below.


Human    10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMNLLNGI 73
            |::||||:..:.|||.|.|:|.:.|||:.:|:..|:: ||||.|.|..:|.:.:...||..|||.
  Fly    16 RSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGY 80

Human    74 KLYGRPIKI-------------QFRSGSSHAPQDVSLSYPQHHVGNSSP-------TSTSPSSRY 118
            ::.||.:::             |...|    || |...|.:......:|       .|..|...|
  Fly    81 EIGGRTLRVDNACTEKSRMEMQQLLQG----PQ-VENPYGEPCEPEDAPELITKTVASLPPEQMY 140

Human   119 ERTMDNM-----TSSAQIIQRSFSSPE----NFQRQAVMNSALRQMSYGGKFGSSPLDQSGFSPS 174
            | .|..|     ::.::..|....:|:    ..|...||.....|.:.|..|.::.:     .|.
  Fly   141 E-LMKQMKLCIVSNPSEARQMLMLNPQLAYALLQAMVVMRIVDPQQALGMLFKANQM-----PPV 199

Human   175 VQSHSHSFNQSSSSQWRQGTPSSQRKV 201
            :..:.|....:.:...:|..|..|.::
  Fly   200 LGGNPHQGPGNHTMMGQQQVPQQQVQI 226

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RBM7NP_001272974.1 RRM_RBM7 9..83 CDD:410005 30/86 (35%)
ZCCHC8 binding. /evidence=ECO:0000269|PubMed:27905398, ECO:0007744|PDB:5LXR, ECO:0007744|PDB:5LXY 25..35 3/9 (33%)
ZCCHC8 binding. /evidence=ECO:0000269|PubMed:27905398, ECO:0007744|PDB:5LXR, ECO:0007744|PDB:5LXY 59..76 5/16 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 163..267 5/39 (13%)
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 30/77 (39%)
CSTF2_hinge 111..190 CDD:433869 15/79 (19%)
CSTF_C 377..416 CDD:464130
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.