DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RBM7 and sqd

DIOPT Version :10

Sequence 1:NP_001272974.1 Gene:RBM7 / 10179 HGNCID:9904 Length:267 Species:Homo sapiens
Sequence 2:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster


Alignment Length:50 Identity:18/50 - (36%)
Similarity:31/50 - (62%) Gaps:1/50 - (2%)


- Green bases have known domain annotations that are detailed below.


Human    12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHE 60
            :|||.|.|::::|.:...|.|.|.:::|::|.||. .:.|.|.|:.|..|
  Fly   138 IFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSE 187

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RBM7NP_001272974.1 RRM_RBM7 9..83 CDD:410005 17/49 (35%)
ZCCHC8 binding. /evidence=ECO:0000269|PubMed:27905398, ECO:0007744|PDB:5LXR, ECO:0007744|PDB:5LXY 25..35 2/9 (22%)
ZCCHC8 binding. /evidence=ECO:0000269|PubMed:27905398, ECO:0007744|PDB:5LXR, ECO:0007744|PDB:5LXY 59..76 0/1 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 163..267
sqdNP_731825.1 RRM1_hnRNPA_hnRNPD_like 58..129 CDD:409763
RRM2_hnRNPD_like 137..211 CDD:240775 17/49 (35%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.