DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42764 and vap-1

DIOPT Version :9

Sequence 1:NP_001189140.1 Gene:CG42764 / 10178963 FlyBaseID:FBgn0261832 Length:232 Species:Drosophila melanogaster
Sequence 2:NP_001024553.1 Gene:vap-1 / 181768 WormBaseID:WBGene00006886 Length:424 Species:Caenorhabditis elegans


Alignment Length:135 Identity:28/135 - (20%)
Similarity:46/135 - (34%) Gaps:43/135 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 RSEAYDAHNDHRRTWV----------------VPELIESDELSHDAEE----------------- 51
            |...||||||.||:..                |.||....|:...|:|                 
 Worm    33 RKMFYDAHNDARRSMAKGLEPNKCGLLSGGKNVYELNWDCEMEAKAQEWADGCPSSFQTFDPTWG 97

  Fly    52 --YAIHLATLNIPDQILYETAKDRNIRVDHLDYPLSEPENDFYTENICEFIRNECVYYWASEGAA 114
              ||.::.  :|.|.:.|.:........:.....|::|:|.:....:..|..      .|:..|:
 Worm    98 QNYATYMG--SIADPLPYASMAVNGWWSEIRTVGLTDPDNKYTNSAMFRFAN------MANGKAS 154

  Fly   115 SYGIA 119
            ::|.|
 Worm   155 AFGCA 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42764NP_001189140.1 SCP 22..172 CDD:294090 27/133 (20%)
vap-1NP_001024553.1 SCP 31..175 CDD:214553 28/135 (21%)
SCP 234..386 CDD:214553
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1528782at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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