DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42818 and cacna2d1a

DIOPT Version :9

Sequence 1:NP_001188821.1 Gene:CG42818 / 10178877 FlyBaseID:FBgn0262000 Length:1085 Species:Drosophila melanogaster
Sequence 2:XP_009298560.1 Gene:cacna2d1a / 561434 ZFINID:ZDB-GENE-041210-215 Length:1093 Species:Danio rerio


Alignment Length:804 Identity:145/804 - (18%)
Similarity:260/804 - (32%) Gaps:232/804 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   247 KWIETQK----SLIDSFSQAIQNTNQNVDNIANVYEVMENLNKNLRELVILLSDKESFPTTESSS 307
            ||.|..:    .||||.| .|:...:..:|....|.|.:|   |.|:||            |.:|
Zfish    39 KWAEKMQEDLVQLIDSES-GIKELKKIFNNFQRHYTVRQN---NPRQLV------------EKAS 87

  Fly   308 SQQTTSIYATTTFYLTSSTFGSTHPIVDENINRVNIMGNLIKGLRNIM--------VQMDET--- 361
                                   |.|.:...||...:..|.....|:.        :.::||   
Zfish    88 -----------------------HEIEEFLANRSKALEALATAAENLQKEHQWKEDLDVNETIYY 129

  Fly   362 NKTSSSTSYTTTESTYI------QPSTSTYLNAEVTTSHPTTSTYEVTNIITDESKIKDMFNLIK 420
            |....|.:.|......:      .|:....::...|..|..|..||.:.||.:|      .|...
Zfish   130 NAKDKSDNQTEPRKNRLILDFTEDPAFKRPVSYNTTAVHIPTDIYEGSTIILNE------LNWTA 188

  Fly   421 GIEDLISQYNGKHKFTSTTSLTGKSNSREPTM--TTYSSAGGITSHSFTTTSPKTVTTSSSHSTT 483
            .::|:..                |:...:|::  ..:.||.|:..:                   
Zfish   189 ALDDVFR----------------KNKEDDPSLHWQVFGSATGLARY------------------- 218

  Fly   484 ESSPSHP-TTSNYEVTVFDQDSHKFKVMKNLI-KELKGLIEHFSDTKNITSTTYSTGDSKSFQPT 546
              .|:.| ..|..::.::|.....:.:..... |::..|::.......:|.....|..|:..:..
Zfish   219 --FPASPWVDSKNKIDLYDVRRRPWYIQGAASPKDMLILVDASGSVSGLTLKLIRTSVSEMLETL 281

  Fly   547 ATTPDSTDRSSSQPITFPESTTSTTNLQSTITNHLSTESTSSQLNTTLSITGTTTPNLTTSTHDF 611
                  :|......::|..|..|....::.:..::..:.|..:....::..|||...:     .|
Zfish   282 ------SDDDYVNIVSFNNSAKSVACFENLVQANVRNKKTLKEAVQKITANGTTDYKI-----GF 335

  Fly   612 KDQINDDDSKSLKH-----LIKILSDLVYSLNDKNNIKSTSQLTTESTFNSSINITNSTTVASST 671
            |:..|...|.::..     :|.:.:|   ...||     .|::..|...:..:.|        .|
Zfish   336 KEAFNQLASMNVSRANCNKIIMLFTD---GGEDK-----ASEIFDEYNSDKRVRI--------FT 384

  Fly   672 FST---------TESMAIHS------TPYLSTREITVFQFNDVENINPIISNNSTTVT---TNIH 718
            ||.         .:.||.|:      .|.:....|...::.||.. .|::..:.....   ||::
Zfish   385 FSVGQHNYDKAPIQYMACHNKGYYYEIPSIGAIRINTQEYLDVLG-RPMVKADKKAKNVQWTNVY 448

  Fly   719 SSTYTTSTTDNTTSYPNLSTTESSPTFDSTISHSNTSSQTRSLGSYKDKIKNI--VELLKKLRKI 781
            ......          .|..|.:.|.|:.|    .||.:       |.|.||:  .:::..:..|
Zfish   449 VDALEL----------GLVVTGTLPVFNKT----RTSKE-------KPKGKNLGPSQMILGVMAI 492

  Fly   782 QKTLADKSKGQLSPMLISRIKAVLKQIVAGNIDSVNGDSTELE----ILLSTTVNPNE------- 835
            ..:|.|             ||.:......|    .||....::    :||...:.|.:       
Zfish   493 DVSLDD-------------IKRLTPHYTLG----PNGYYFAIDPNGYVLLHPNLQPKDLKSQEPV 540

  Fly   836 --DTTDLTMEKLLKLFDDFERMYNVLLD---DSIQSTTQSTTQNNTI----FST-TYSTIFSTTQ 890
              |..|..||..:|:  |..|.   ::|   ..|:..|...:|:...    |.| |:|.:.....
Zfish   541 TLDFLDAEMEDEVKV--DIRRS---MIDGERSQIRFHTLMKSQDERYIDKGFRTYTWSPVTDADY 600

  Fly   891 SISTTSPTQYALTSSTPNTSTTSHSSTPSSINNLRSDESNNHQPIVDAIQQLKMALY--HDFYAF 953
            |::...| .|:::........|...:....:.||...||..    ||..::....|.  .|:...
Zfish   601 SLALVLP-DYSMSYIKATIGDTITQAKSWILENLAVSESLQ----VDKFEEYGYTLIAPRDYCED 660

  Fly   954 KKSQEERMEKILQLLNGKPIDRRT 977
            .|:|.|.|.:.|...| :.||.:|
Zfish   661 LKAQNENMTQFLIDFN-EYIDVKT 683

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42818NP_001188821.1 PHA03255 642..>763 CDD:165513 23/138 (17%)
cacna2d1aXP_009298560.1 VWA_N 110..224 CDD:285584 23/156 (15%)
vWFA 237..415 CDD:294047 31/204 (15%)
Cache_1 444..532 CDD:280839 23/125 (18%)
VGCC_alpha2 545..627 CDD:285647 18/87 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2353
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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