DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG42818 and Cacna2d4

DIOPT Version :9

Sequence 1:NP_001188821.1 Gene:CG42818 / 10178877 FlyBaseID:FBgn0262000 Length:1085 Species:Drosophila melanogaster
Sequence 2:NP_001178680.2 Gene:Cacna2d4 / 312668 RGDID:1562038 Length:1144 Species:Rattus norvegicus


Alignment Length:821 Identity:139/821 - (16%)
Similarity:252/821 - (30%) Gaps:298/821 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   431 GKHKFTSTTSL--------TGKSNSREPTMTTYSSAG----GITSHSFTTTSP---------KTV 474
            |..||..:.|.        :|.:.:|.||:::..|.|    ...:.:|....|         .::
  Rat     6 GGSKFVHSRSTVLLPCPSPSGNTMARSPTLSSSHSWGHRGQQTAAWTFLRKMPIVLWLLLLDTSL 70

  Fly   475 TTSSSHST-----------TESSPSHPTTSNYEVTVFDQDSHKFKVMKNLIKELKG--LIEHFSD 526
            .|:.|.:|           |.....:.|.:.|..::..|..:|.......|||:.|  |::.|| 
  Rat    71 PTARSQATIPLETVKLWAETFGRDLYSTVTRYSGSLLLQKKYKDAEPSLKIKEVDGLELVKKFS- 134

  Fly   527 TKNITSTTYSTGDSKSFQPTATTPDSTDRSSSQPITFPESTTSTTNLQSTITNHLSTESTSSQLN 591
                                    :..:....:.:...||...... ::.:.:..:.....:..|
  Rat   135 ------------------------EDMETMLRRKVEAVESLVEAAE-EADLNHEFNASLVFNYYN 174

  Fly   592 TTLSITGTTTPNLTTSTHDFKDQINDDDSKSLKHLIKILSD-LVYSLNDKNNIK-----STSQLT 650
            :.|                    ||:.|.|.  :.:::.:: |:.|....||::     |:.||.
  Rat   175 SVL--------------------INEKDDKG--NYVELGAEFLLESDAHFNNLRVNVSMSSVQLP 217

  Fly   651 TESTFNSSINITNSTTVASSTFSTTESMAIHSTPYLSTREITVFQFNDVENINPIISNN---STT 712
            | :.:|...:|.|..                   |:|            |.:||:...|   ..|
  Rat   218 T-NVYNKDPDILNGV-------------------YMS------------EALNPVFVENFQRDPT 250

  Fly   713 VTTNIHSSTYTTSTTDNTTSYPNLSTTESSP---TFD---------------------------- 746
            :|..     |..|:|.....||.:..|....   .||                            
  Rat   251 LTWQ-----YFGSSTGFFRIYPGIKWTPDENGVIAFDCRNRGWYIQAATSPKDIVILVDMSGSMK 310

  Fly   747 ---STISHSNTSSQTRSLG--------SYKDKIKNIVELLKKL--------RKIQKTLAD----K 788
               ..|:....::...:||        :|.|.:..|....|.:        |:..|.|.|    |
  Rat   311 GLRMAIAKHTVTTILDTLGENDFVNIIAYNDYVHYIEPCFKGILVQADRDNREHFKQLVDELMVK 375

  Fly   789 SKGQLSPMLISRIKAVLKQIVAGNIDSVNGDSTELEILLSTTVNPNEDTTDLTMEKLLKLFDDFE 853
            ..|.:|..||...: :|||..    :|..|......|:|         .||..:|....:|:.:.
  Rat   376 GVGIVSQALIEAFQ-ILKQFQ----ESRQGSLCNQAIML---------VTDGAVEDYEPVFETYN 426

  Fly   854 ------RMYNVLLDDSIQSTTQS--TTQNNTIFSTTYSTIFSTTQSISTTSPTQYALTSSTPNTS 910
                  |::..|:...:....:.  ...||..:.|..||:....:::     .:|....|.|...
  Rat   427 WPDRKVRVFTYLIGREVTFADRMKWIACNNKGYYTQISTLADAQENV-----MEYLHVLSRPMVI 486

  Fly   911 TTSH--------------SSTPSSINNL---------RSDESNNHQPIVDAI-------QQLKMA 945
            ...|              :|...|:..|         :.:|:.:|..::..:       :.:|:|
  Rat   487 NHDHDIIWTEAYMDSRLLTSEAQSLMLLTTVAMPVFSKKNETRSHGILLGVVGSDVTLRELMKLA 551

  Fly   946 LYHDF----YAFKKSQEERMEKILQLLNG--------KPIDRRTKTIAKPRTIRKKVSREIQKRN 998
            ..:..    |||           |...||        :|:.|..|.: ||:.....|..      
  Rat   552 PRYKLGVHGYAF-----------LNTNNGYILSHPDLRPLYREGKKL-KPKPNYNSVDL------ 598

  Fly   999 SDVK-EDKIHHYKADKFIKNPKNGNQDSHIPKPILNSAR----------SKIKDVPLKLSAIKVN 1052
            |:|: ||:....:....  |.:.|:....:..|:....|          :.|.|.|..|..:...
  Rat   599 SEVEWEDQAEILRTAMI--NGETGSHSMDVKVPLDKGKRVLFLTNDYFFTDISDTPFSLGVVLTR 661

  Fly  1053 G--------------GLKHL--PSKRKANEEVSAMHEIFPE 1077
            |              ||..|  |....|::.:..:.:|.|:
  Rat   662 GHGEYILLGNTSVEEGLHDLLHPDLTLASDWIYCITDIDPD 702

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42818NP_001188821.1 PHA03255 642..>763 CDD:165513 27/170 (16%)
Cacna2d4NP_001178680.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2353
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.