DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42815 and Abca4

DIOPT Version :9

Sequence 1:NP_001189127.1 Gene:CG42815 / 10178812 FlyBaseID:FBgn0261997 Length:101 Species:Drosophila melanogaster
Sequence 2:NP_001101191.1 Gene:Abca4 / 310836 RGDID:1309445 Length:2290 Species:Rattus norvegicus


Alignment Length:30 Identity:10/30 - (33%)
Similarity:15/30 - (50%) Gaps:1/30 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 GTGTATTSTTVAPTTTSTTTAEATVHHRRI 76
            |.|..||...:...|| .|:.:||:..:.|
  Rat  1952 GAGKTTTFKMLTGDTT-VTSGDATIAGKSI 1980

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42815NP_001189127.1 None
Abca4NP_001101191.1 rim_protein 1..2249 CDD:130324 10/30 (33%)
ABC_subfamily_A 907..1126 CDD:213230
ABC_subfamily_A 1915..2135 CDD:213230 10/30 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0059
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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