DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG42780 and crispld1b

DIOPT Version :9

Sequence 1:NP_001284979.1 Gene:CG42780 / 10178796 FlyBaseID:FBgn0261848 Length:254 Species:Drosophila melanogaster
Sequence 2:XP_009296842.1 Gene:crispld1b / 393442 ZFINID:ZDB-GENE-040426-1204 Length:509 Species:Danio rerio


Alignment Length:218 Identity:58/218 - (26%)
Similarity:82/218 - (37%) Gaps:53/218 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 LNLGDKNALIKAHNLVRQKWASGKAKIKWTACKMAKMEWNKDLEKLAILNAKTCLMGHDECHNTE 121
            ::..|...::..||.:|       .::...|..|..|.|:.:||:.|...|.|||..|...|...
Zfish    58 ISQSDMQLILDLHNKLR-------GQVYPPASNMEYMVWDTELERSAEHWAHTCLWEHGPSHLLT 115

  Fly   122 KFRLSGQNLFAMGFSHARITKTKMNMTLSMLFEMAVQKWAGEEKDITAEDLKKTTPNPP-----E 181
            :.   ||||   |....|......:          ||.|..|.:|.:....::..|:.|     .
Zfish   116 RI---GQNL---GAHWGRDRPPTFH----------VQAWYDEVRDFSYPYPQECNPHCPYRCSGP 164

  Fly   182 VIGHLTVLINEKSNAVGCGL-VAYNL---GEI--RRYNLACNYAYT-NVIGERVYEECAKAGIEC 239
            |..|.|.|:...||.:||.: |.||:   |.|  :...|.|||:.. |..|...|    |.|..|
Zfish   165 VCTHYTQLVWATSNKIGCAINVCYNMNVWGMIWAKAVYLVCNYSPPGNWWGHAPY----KHGTPC 225

  Fly   240 AKGIDQKYPP---------LCAK 253
            :     ..||         ||.|
Zfish   226 S-----ACPPSYGGGCRNNLCYK 243

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42780NP_001284979.1 SCP_euk 62..219 CDD:240180 45/167 (27%)
crispld1bXP_009296842.1 SCP_euk 64..208 CDD:240180 45/166 (27%)
LCCL 301..385 CDD:128866
LCCL 404..501 CDD:281766
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170585734
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2340
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1528782at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10334
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.850

Return to query results.
Submit another query.