DRSC/TRiP Functional Genomics Resources

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Protein Alignment FARP1 and Cdep

DIOPT Version :9

Sequence 1:NP_001273768.1 Gene:FARP1 / 10160 HGNCID:3591 Length:1076 Species:Homo sapiens
Sequence 2:NP_001097685.2 Gene:Cdep / 40608 FlyBaseID:FBgn0265082 Length:4273 Species:Drosophila melanogaster


Alignment Length:1244 Identity:356/1244 - (28%)
Similarity:527/1244 - (42%) Gaps:338/1244 - (27%)


- Green bases have known domain annotations that are detailed below.


Human    10 PGSRLGAPENSGISTLERGQKPPPTP---SGKLVSIKIQMLDDTQEAFEVPQRAPGKVLLDAVCN 71
            ||.|:    ...:||.......|.||   .||.::::||||||:...|:|..:|.|:||.:.||.
  Fly    40 PGGRM----THSLSTPSGVDGTPSTPRHRGGKKLTVRIQMLDDSITMFQVQAKALGRVLFEQVCR 100

Human    72 HLNLVEGDYFGLEFPD---HKKITVWLDLLKPIVKQIR----RPKHVVVKFVVKFFPPDHTQLQE 129
            .|||:|.||||||:.:   |.|  .||||.||:.:|:.    .|   |::|.:||:.||..||:|
  Fly   101 QLNLLEADYFGLEYQEVSTHTK--YWLDLEKPMNRQVGLSLIDP---VLRFCIKFYTPDPAQLEE 160

Human   130 ELTRYLFALQVKQDLAQGRLTCNDTSAALLISHIVQSEIGDF--DEALDREHLAKNKYIPQQDA- 191
            |.|||||.||:|:|||.|.|.|||.:|||:.|:|||:..|||  ::..|..:|:..:::|.||| 
  Fly   161 EYTRYLFCLQIKRDLATGSLQCNDNTAALMASYIVQASCGDFVPEDYPDHTYLSSYRFVPNQDAT 225

Human   192 LEDKIVEFHHNHIGQTPAESDFQLLEIARRLEMYGIRLHPAKDREGTKINLAVANTGILVFQGFT 256
            ::.||:|.|..|:||:|||:|..|||.|||.|:||:::|||||.||..:|||||:.||.|||..|
  Fly   226 MQRKIMENHKKHVGQSPAEADLNLLETARRCELYGMKMHPAKDVEGVPLNLAVAHMGITVFQNIT 290

Human   257 KINAFNWAKVRKLSFKRKRFLIKLRPDANSAYQDTLEFLMASRDFCKSFWKICVEHHAFFRLFE- 320
            :||.|:|||:||:||||||||:||.|:....|:||:||....|:.||:|||.|||:|.|||... 
  Fly   291 RINTFSWAKIRKISFKRKRFLVKLHPEGYGYYKDTVEFFFEGRNECKNFWKKCVENHGFFRCTAV 355

Human   321 EPKPKPKPVLFSRGSSFRFSGRTQKQVLDYVKEGGHKKVQFERKHSKIH---SIRSLASQPTELN 382
            :..|:.|..:.|||||||:||:||||::::|:|...|:..|:|..|...   :..|.:...|.:|
  Fly   356 QNTPRRKTRVLSRGSSFRYSGKTQKQIIEFVRENYVKRQNFQRSQSFRQGPLNASSRSQSHTYVN 420

Human   383 SEVLE-------------QSQQSTSL----------TFGEGAESPGGQSCRRGKEPKVSAGEPGS 424
            |.:..             ::|.|.|:          |.....::|.|....:....:|...:..:
  Fly   421 SSISANPLLPIDTAAWDYRNQCSDSMTPSLTKKAADTLDRRRDNPIGHMRSQVTAAQVEIYQTKN 485

Human   425 HPSPAPRRSPAGNKQAD-GAASAPTEEEEEVVKDRTQQSK---PQPPQ----PSTGS-------- 473
            :.:.    ||...::|: .||.|..:....|..|:...::   ||.||    ||..|        
  Fly   486 YAAD----SPTSQEEAECSAAGAERQHHSAVAMDKLNSNRSLSPQGPQSWTSPSHSSHHQQRGPD 546

Human   474 ---------LTGSPHLSEL---------SVNSQGGVAPANVTL------SPNLSPDTKQASPLI- 513
                     .||..|||.|         ||.||..| ||:..|      |.:.:.:|..::..: 
  Fly   547 PARVHPGDHNTGLSHLSHLYSSSTPRRVSVGSQAFV-PASPQLISINTPSSSTNHNTMHSTSTVV 610

Human   514 -------SPLLNDQA-CPRTDD--EDEGRRKRFPTDKAYFIAKEVSTTERTYLKDLEVITSWFQS 568
                   |..|.::| .|.|.|  |:||              :.|...|...|.:.||.:....|
  Fly   611 RSVDLNSSMELEEEAEDPGTADTEEEEG--------------EPVGEEEEEELVEEEVDSDLTAS 661

Human   569 TVSKE------------DAMPEALKSLIFPNFE----------PLHKFHTNFLKEIEQRLALWEG 611
            |:::|            .|:...|.|...|...          |:|...||:....:..|    .
  Fly   662 TINRETMGAASAAAASASALGSGLASAHRPQLRSQESQSLTATPVHYSSTNYSMSKQCML----N 722

Human   612 RSNAQIRDYQRIGDVMLKNIQGMKHL----------AAHLWKHSEALEALE-NGI--------KS 657
            .:||...:.: ..:::..:|..|.|.          ..|...:||.|...| |.|        ||
  Fly   723 NANANSTETE-TDNIIYTDINDMGHYKYPDFHSSAHQEHKISNSEHLNLNERNDIYATVNRKAKS 786

Human   658 SRRLENFCRDFELQKVCYLPLNTFLLRPLHRLMHYKQVLERLCKHHPPSHADFRDCRAALAEITE 722
            ..|.::|..:|..|.:        |.....:.|...||...|.:....::|      |||.|   
  Fly   787 KIREKHFSDEFIDQSI--------LQYTRAKQMGLSQVPVLLQQPSTSAYA------AALQE--- 834

Human   723 MVAQLHGTMIKMENFQKLHELKKDLIGIDNLVVPGRPGSFSL----IRTPHLGQARRIPCAPERR 783
                   ......::|..::|..          |....|.|.    ..|...||:.|...|....
  Fly   835 -------RSYNSGSYQYHNDLNH----------PSESSSSSYFGTGFGTKRYGQSERTKLAQSEN 882

Human   784 ---PLLLVKEFIRLGSL---SKLSGKGLQQRMFFLFNDVLLYTSRGLT------------ASNQF 830
               |.|..:......||   |:|||          .:.|..|.|..:|            :|:..
  Fly   883 YLTPSLDSQSSRHTHSLPRNSELSG----------VDSVDSYDSHYITHHSVGILPPGHLSSSSE 937

Human   831 KVHGQLP---LYGMT----------------IEESEDEWGVPHCLTLRGQRQSIIVAASSRSEME 876
            |:..|||   ||..|                .||.|||          |:.      ...:.|.:
  Fly   938 KLDFQLPSGNLYSTTQFVKPEDASAHYMEDEEEEEEDE----------GEN------IYDQVERD 986

Human   877 KWVEDIQMAIDLAEKSSSP-------------APEFLASSPPDNKSPDEATAADQESEDDLSASR 928
            .|::. ....||.|:.||.             ..|||:|    |:.....|..|........|..
  Fly   987 SWLKS-SSCKDLFERYSSTYYDREHSKPMTAFDKEFLSS----NRIDSPVTRYDDSRHSLYVAKN 1046

Human   929 TSLERQAPHRG-------------------NTMVHVCWHRNTSVSMVDFSIAVE--NQLSGNLLR 972
            .|::   .|:|                   ||..|...|.:    .:|:|.:.:  :|.|..||.
  Fly  1047 HSID---AHQGFSPLPQSKVYSSSYPGSTYNTQEHKRQHGH----HMDYSGSQDDISQDSYELLE 1104

Human   973 KFKNSNGWQKLWVVFTNFCLFFYKSHQDNHPLA-SLPLLGYSLTIPSESENIQKDYVFKLHFKSH 1036
            |:              :...|..:...::|..: ||....|   |||:.|::.:.:      :.|
  Fly  1105 KY--------------DIDFFGGRGRSEDHMRSCSLDSGNY---IPSDDESVSEGH------QQH 1146

Human  1037 VYYFRAESE 1045
            .|  |:|.:
  Fly  1147 KY--RSEMD 1153

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FARP1NP_001273768.1 B41 42..230 CDD:214604 96/197 (49%)
FERM_N 44..107 CDD:286467 33/69 (48%)
FERM_M 127..230 CDD:278785 55/105 (52%)
FERM_C_FARP1-like 217..337 CDD:270014 68/120 (57%)
FA 329..370 CDD:285894 19/43 (44%)
RhoGEF 542..728 CDD:238091 45/226 (20%)
PH1_FARP1-like 789..892 CDD:269928 29/136 (21%)
PH 792..886 CDD:278594 26/127 (20%)
PH2_FARP1-like 962..1059 CDD:270055 18/87 (21%)
PH 967..1060 CDD:278594 17/80 (21%)
CdepNP_001097685.2 B41 70..264 CDD:214604 96/198 (48%)
FERM_N 73..134 CDD:286467 32/62 (52%)
FERM_B-lobe 163..256 CDD:271216 48/92 (52%)
FERM_C_FARP1-like 251..372 CDD:270014 68/120 (57%)
FA 364..406 CDD:285894 19/41 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 125 1.000 Domainoid score I5483
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm41275
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45858
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5540
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
55.040

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