DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RBM12 and CG7879

DIOPT Version :9

Sequence 1:NP_001185767.1 Gene:RBM12 / 10137 HGNCID:9898 Length:932 Species:Homo sapiens
Sequence 2:NP_647626.1 Gene:CG7879 / 38184 FlyBaseID:FBgn0035235 Length:985 Species:Drosophila melanogaster


Alignment Length:1133 Identity:239/1133 - (21%)
Similarity:386/1133 - (34%) Gaps:355/1133 - (31%)


- Green bases have known domain annotations that are detailed below.


Human     1 MAVVIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGELGEAFIVFATDEDARLGMMRTGGTIK 65
            |:|:||||.||..|...|||:|||||:||:|||||:|||:|:|||.|:||||||..|::....:.
  Fly     1 MSVIIRLQNLPWTANARDIRNFFSGLSIPEGGVHIIGGEMGDAFIAFSTDEDARCAMLKDREKLM 65

Human    66 GSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPSSGMSSRVNLPTTVSNFNNPS 130
            ..:|.|||||:.|||.:||.:|:             |:.:..|.|..:...|.:|.|.:....|:
  Fly    66 EIQVRLLLSSRAEMQKVIETARK-------------AASAQAPVSVPVPMPVVVPVTAAKVAGPA 117

Human   131 ----PSVVTATTSVHESN-KNIQTFSTASVGTAPPNMGASFGSPTFSSTVPSTASP--------- 181
                |.:....|.:.:.. |.:.|.:..|..|.....|.:....|...:...::|.         
  Fly   118 APLPPIIGGLNTFLGQGQVKGVATGTVPSFLTYQQQAGITLSDVTGRRSRSRSSSSDDSDRERER 182

Human   182 ----------------MNTVPPPPIPPIPAMPSLP-PMPSIPPIPVPPPVPTLPPVP-------- 221
                            ::......:..:....:|| |.       ..||...||.|.        
  Fly   183 DRQRERERGRKRRSDRLDKSQERELKMVAGGGALPSPW-------AQPPQNQLPAVGLGLNMGLN 240

Human   222 -PVPPIPPVPSVPPMTPLPPMSGMPPLNPPP-----VAPLPAGMNGSGAPMN-LNNNLNPMFLGP 279
             .:|.||.:.|....|....::....|.|..     :..|....:||.||.. ..:...|:....
  Fly   241 LNLPQIPSLQSYTTSTTTTNVTNNYNLEPSATSVQLLTALQQVSSGSAAPAQPSKSESEPIAFAS 305

Human   280 LNPVNPI-------------QMNSQSSVKPL-----------PINPDDLYVSVHGMPFSAMENDV 320
            :||...:             |..:|:.|.|.           .:..|..|:.:.||..:...:|:
  Fly   306 VNPYAQMYPQLFQQQQMLLQQQQTQAKVSPTMGGSPGGGSTPQVVADTCYIRMSGMCQNTSYSDI 370

Human   321 RDFFHGLRV--DAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWV 383
            |.:|.|:.:  :.:.::..: |...|...|:|.......:|::||..:...|.:::.|..:.::.
  Fly   371 RKYFQGMYIPHNGIKIMMVN-GSRTGVAYVEFSRVSSAQKAVQRNNTMFRDRLIQIVPVGDDEFE 434

Human   384 AAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRSPHEAG------------------F 430
            .|                       ....|..||..|||...|..|                  .
  Fly   435 MA-----------------------EERASRQGQDGSRSHGNHNGGDRGERGGGAPVPVPRPVTN 476

Human   431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAAL-CRHKQY 494
            .:|::.||.....:.::..|.....|.| |.::..|..:.....||.|..||:..:|| ...|.|
  Fly   477 VLYIEDLPQTTTEQDIMKMFSASYTVVD-ILLSPSPKNRRESVAFVLFAREAEADSALQDTSKHY 540

Human   495 MGNRFIQVHPITKKGM---LEKIDMIRKRLQNFSYDQREMILNPE-------------------- 536
            :|.|.::|...:::.|   .||.....::|.....||||.:|..:                    
  Fly   541 IGFRQLRVRSSSEEDMQNAKEKQRRANEQLLKEEADQREELLKDQQRRQKQQQQENENIQANRFA 605

Human   537 GD---------------------------------VNSAKVCAH--------ITNIPFSIT---- 556
            .|                                 ||...:..|        :.|.||::.    
  Fly   606 ADPRRRQAEDQQQQQQMNMGPNFNSNMSPNMMAPFVNGGNMPFHMPPLQQNGVNNFPFNMNNNYN 670

Human   557 --------------------------KMDV------------------LQFLEGIPVDENAVHVL 577
                                      :.||                  |..||.:.::.  :..|
  Fly   671 YNGNSNGNGPNYPNDNGGAGVIQRPRQEDVFVRVHNCEYATRANDLGELFSLEHLRIEH--IEQL 733

Human   578 VDNNGQGLGQALVQFKNEDDARKSER-LHRKKLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKM 641
            .:...|..|:.:|:|.:....:.:.| .|.::..||...|..:|.:::.:             :|
  Fly   734 FNERNQSSGEFIVEFSDPASCKLAIREFHNRRFRGRGLRVVAITPQEIAD-------------RM 785

Human   642 PVPGNPAVPGMPNAGLPGVGLPSAGLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGGEEHA 706
            ..|....:||                 |.|      |..|.|:....|||               
  Fly   786 KKPFMDYLPG-----------------GNG------PRKAETNNANDGAG--------------- 812

Human   707 FLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGLPGLGLDVPG 771
                |:|.:..      |....|.:.|..|...|     :....||            |.|:   
  Fly   813 ----GNKASAQ------PSRRRGPSRFDKPQEQP-----SQQQDRP------------LSLE--- 847

Human   772 FGGGPNNLSGPSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPGPG 836
               ..:|.|..|          |.|......| |....|.|.|:.   ..|...|......|.|.
  Fly   848 ---REDNSSTSS----------NAPVKQHFNP-FARPDPPLSSSS---LSPSNQGQVKPTSPVPV 895

Human   837 PIHIGGPPGFASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAM 901
            |..|     ......:|| .|:.::|:||...:.:|:.||..|::.|..:..::|::|.|||:..
  Fly   896 PTSI-----IPDKFNRPG-CVVAMRNVPFKAELKDIMRFFSDYKLSPDDIIRRFNDEGKPTGDTR 954

Human   902 VAFESRDEATAAVIDLNDRPIGSRKVKL 929
            |||||..||.:|......:.|.:|.|.|
  Fly   955 VAFESPSEARSAFESRRKKQIFNRTVYL 982

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RBM12NP_001185767.1 RRM1_RBM12 1..92 CDD:241189 51/90 (57%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 96..116 3/19 (16%)
RRM2_RBM12 303..377 CDD:241191 15/75 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 392..424 6/31 (19%)
RRM3_RBM12 421..521 CDD:240956 27/121 (22%)
RRM4_RBM12 545..632 CDD:241193 20/143 (14%)
Sporozoite_P67 <633..>764 CDD:253298 21/130 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 717..853 25/135 (19%)
RRM5_RBM12 855..929 CDD:241195 25/73 (34%)
CG7879NP_647626.1 RRM1_RBM12_like 2..75 CDD:240954 42/72 (58%)
RRM_hnRNPH_ESRPs_RBM12_like 355..425 CDD:240700 15/70 (21%)
RRM <364..551 CDD:223796 42/211 (20%)
RRM_SF 478..549 CDD:240668 19/71 (27%)
RRM_SF 702..773 CDD:240668 12/72 (17%)
RRM_hnRNPH_ESRPs_RBM12_like 910..982 CDD:240700 25/71 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4307
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 200 1.000 Inparanoid score I3782
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001433
OrthoInspector 1 1.000 - - otm40887
orthoMCL 1 0.900 - - OOG6_112833
Panther 1 1.100 - - O PTHR13976
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X6068
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
87.910

Return to query results.
Submit another query.