DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CDH15 and cdh15

DIOPT Version :10

Sequence 1:NP_004924.1 Gene:CDH15 / 1013 HGNCID:1754 Length:814 Species:Homo sapiens
Sequence 2:XP_002933722.3 Gene:cdh15 / 100489106 XenbaseID:XB-GENE-983662 Length:791 Species:Xenopus tropicalis


Alignment Length:797 Identity:455/797 - (57%)
Similarity:573/797 - (71%) Gaps:22/797 - (2%)


- Green bases have known domain annotations that are detailed below.


Human     1 MDAAFLLVLGLLAQSLCL--SLGVPGWRRPTT--LYPWRRAPALS----RVRRAWVIPPISVSEN 57
            |::..||.:..|...||.  ||.|...:.|.|  .:|||:....:    ||:||||||||||.||
 Frog     1 MESRSLLAMCFLMPFLCQLHSLMVLDKQAPETPVFFPWRQRGRETGKGHRVKRAWVIPPISVPEN 65

Human    58 HKRLPYPLVQIKSDKQQLGSVIYSIQGPGVDEEPRGVFSIDKFTGKVFLNAMLDREKTDRFRLRA 122
            .:|||..|||:|||||..|.|||||:||||||||||:|:|:|.||:|.|||:||||||:||:|:|
 Frog    66 FRRLPMLLVQLKSDKQHHGRVIYSIKGPGVDEEPRGIFTINKNTGEVSLNAVLDREKTERFKLQA 130

Human   123 FALDLGGSTLEDPTDLEIVVVDQNDNRPAFLQEAFTGRVLEGAVPGTYVTRAEATDADDPETDNA 187
            ||:|..|.||||||.|||||:|||||||.|:||.|||.:.|||:|||:|.:.||||||||.||||
 Frog   131 FAVDEVGLTLEDPTKLEIVVLDQNDNRPVFVQEVFTGHLAEGAIPGTFVLKVEATDADDPRTDNA 195

Human   188 ALRFSILQQGSPELFSIDELTGEIRTVQVGLDREVVAVYNLTLQVADMSGDGLTATASAIITLDD 252
            .|::||:||.:||:|||::.||||||||||||||||..||||:|||||.|:|||.||.|:||::|
 Frog   196 ELKYSIIQQDTPEMFSINQNTGEIRTVQVGLDREVVGFYNLTIQVADMLGEGLTNTARAVITIED 260

Human   253 INDNAPEFTRDEFFMEAIEAVSGVDVGRLEVEDRDLPGSPNWVARFTILEGDPDGQFTIRTDPKT 317
            ||||.|||.: ||.||..|..|.:|:||:.|.|:|||||.||..|:.|.:||....|:|||||:|
 Frog   261 INDNPPEFMQ-EFSMEVPENRSNLDIGRVNVTDKDLPGSVNWKVRYFITKGDIKRAFSIRTDPQT 324

Human   318 NEGVLSIVKALDYESCEHYELKVSVQNEAPLQAAALRAERGQAKVRVHVQDTNEPPVFQENPLRT 382
            |:|:||:||.||:|..|.|:|.:||:|||.|..:|.|..|.|.:|.:.|::.||||||.|||...
 Frog   325 NDGILSLVKPLDHEEQEFYQLTISVENEAELSPSAPRPSRSQTQVNITVKNLNEPPVFSENPKVV 389

Human   383 SLAEGAPPGTLVATFSARDPDTEQLQRLSYSKDYDPEDWLQVDAATGRIQTQHVLSPASPFLKGG 447
            .:.|....|:.:..::|.|||::|.|::.||...||.:||.:|..:|:::.::.|...||||:.|
 Frog   390 RVKERLAAGSDITVYTAVDPDSKQTQKIRYSVVSDPANWLSLDENSGQLRARYALDRKSPFLQRG 454

Human   448 WYRAIVLAQDDASQPRTATGTLSIEILEVNDHAPVLAPPPPGSLCSEPHQGPGLLLGATDEDLPP 512
            ||.|::.|.|:|..|..:||.||:|:.|||||||||. |..|.:|.....|.|:||.|:|||:||
 Frog   455 WYTALIAATDNAVPPLNSTGILSVEVQEVNDHAPVLL-PHLGDMCKNSQPGSGMLLTASDEDMPP 518

Human   513 HGAPFHFQLSPRLPELGRNWSLSQVNVSHARLRPRHQVPEGLHRLSLLLRDSGQPPQQREQPLNV 577
            ...||||||.....||..|||||.||.:||.|:....|.||::.|...:.|||.||..:.|.|||
 Frog   519 QAHPFHFQLDTSFTELTSNWSLSPVNDTHALLQLIADVQEGVYTLPFWVSDSGNPPLAQVQFLNV 583

Human   578 TVCRCGKDGVCLPGAAALLAGGTGLSLGALVIVLASALLLLVLVLLVALRARFWKQSRG----KG 638
            :||.|...|.|...|.||...|||:||.||:|:::|..||||||||:.|    ::.||.    ||
 Frog   584 SVCMCDALGTCKGNAVALFGSGTGISLSALIIIMSSIALLLVLVLLLLL----FRCSRSGDVHKG 644

Human   639 LLHGPQDDLRDNVLNYDEQGGGEEDQDAYDISQLRHPTALSLPLGP---PPLRRDAPQGRLHPQP 700
            ||...:||:|||:.|||||||||||||.|||.:||:| .||:|..|   ||:|||.|..:..|:.
 Frog   645 LLADSEDDVRDNIFNYDEQGGGEEDQDGYDIIRLRNP-GLSVPPSPRLKPPIRRDTPYNQTLPRY 708

Human   701 PRVLPTSPLDIADFINDGLEAADSDPSVPPYDTALIYDYEGDGSVAGTLSSILSSQGDEDQDYDY 765
            ||.....|.||||||:|||:|||||||||||||||||||||:|||||||||||||:.|.||:|||
 Frog   709 PRRPTDRPSDIADFIHDGLQAADSDPSVPPYDTALIYDYEGEGSVAGTLSSILSSEEDSDQEYDY 773

Human   766 LRDWGPRFARLADMYGH 782
            |::|||||.||||||||
 Frog   774 LQEWGPRFRRLADMYGH 790

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CDH15NP_004924.1 Cadherin_repeat 52..148 CDD:206637 69/95 (73%)
Cadherin_repeat 157..256 CDD:206637 69/98 (70%)
Cadherin_repeat 271..371 CDD:206637 49/99 (49%)
Cadherin_repeat 379..479 CDD:206637 38/99 (38%)
CA_like 487..580 CDD:481204 43/92 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 636..663 18/30 (60%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 676..703 12/29 (41%)
CADH_Y-type_LIR 722..781 CDD:460041 50/58 (86%)
cdh15XP_002933722.3 Cadherin_repeat 60..156 CDD:206637 69/95 (73%)
Cadherin_repeat 164..264 CDD:206637 69/99 (70%)
Cadherin 272..373 CDD:394985 51/100 (51%)
Cadherin_repeat 388..486 CDD:206637 37/97 (38%)
CADH_Y-type_LIR 730..789 CDD:460041 50/58 (86%)

Return to query results.
Submit another query.