DRSC/TRiP Functional Genomics Resources

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Protein Alignment OPN1MW3 and tyra-3

DIOPT Version :9

Sequence 1:NP_001316996.1 Gene:OPN1MW3 / 101060233 HGNCID:51831 Length:364 Species:Homo sapiens
Sequence 2:NP_001024805.1 Gene:tyra-3 / 187427 WormBaseID:WBGene00006475 Length:592 Species:Caenorhabditis elegans


Alignment Length:579 Identity:91/579 - (15%)
Similarity:172/579 - (29%) Gaps:249/579 - (43%)


- Green bases have known domain annotations that are detailed below.


Human     1 MAQQWSLQRLAGRHPQDSYEDSTQSSIFTY----------TNSNSTRGPFEGP--------NYHI 47
            ||..|..:.|:.:   ..:|.....|:|.|          |:.::..|....|        :..:
 Worm     1 MAIWWWFEILSAK---SDFESIMAWSVFIYIQAALGGSLWTSISTPEGSVSLPSSTTATITSTTV 62

Human    48 APRWVYHLTSV-------------------------------WMIFVVIASVFTNGLVLAATMKF 81
            .|.||....|:                               :::.:::.::|.|.||:.:.:.:
 Worm    63 TPVWVASKNSIPFADTLGSNSPLSEYLPVKLCLGIHDVFIALFLVMLILLTIFGNILVVLSVVVY 127

Human    82 KKLRHPLNWILVNLAVADLAETVIASTISVVNQVYGY-FVLGHPMCVLEGYTVSLCGITGLWSLA 145
            |::|...|.:|.:||.|||...:|...:|:::.::.: :.||..:|.:...:..|.....:.:|.
 Worm   128 KRMRTFTNILLTSLATADLLVGLIVMPMSLLDLLHNHRWPLGRFLCRMWATSDVLLCTASILNLC 192

Human   146 IISWERWMVVCKPFGNVRFDAKLAIVGIAFSWIWAA--VWTAPP--IFGWSRYWPHGLKTSCGPD 206
            :||.:|:..:..|....|..::....|: .:.:||.  |..:||  |..|:.:..:...|....|
 Worm   193 VISLDRYFAITSPLKYPRTRSRKMAAGL-LTAVWAISFVVCSPPWVIPSWNLFIDNNNNTGSSED 256

Human   207 VFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVW------------------LAIRAVAKQQ 253
             |..:..|.| :|.|...:.....||.:::..|.:::                  |:.|....||
 Worm   257 -FKCAYSPSV-AYRIYSALGSFYLPLLVMLFVYFKIFRVASEREALMRQSVGTCRLSNRLTKTQQ 319

Human   254 KES-------------------------------------------------EST---------- 259
            |..                                                 :||          
 Worm   320 KNQRNNLRTASAPHSRTRVQVNHNCGRVNYSVRPVEYANRVENSLKPSHERFDSTDCEDSPPNGD 384

Human   260 ----------------------------------------------------------------- 259
                                                                             
 Worm   385 SLEAGTTCNISMSLVTNSPPNGLQKEAKNSMERECHSLADIVNSADTPVRKNTEVGVAPSLSKRA 449

Human   260 -------------QKA------------------------EKEVTRMVVVMVLAFCFCWGPYAFF 287
                         |||                        |::..:.:.::||.|..||.|  ||
 Worm   450 RQCNARLQPNNLLQKAHEHYQINGPGKAVRGSKEKMVYMRERKALKTIGIVVLGFIICWMP--FF 512

Human   288 ACFAA----ANP--GYPFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCILQL--FG 338
            ..:..    ::|  ..|.:.:.:....:...|.::.||:||...|..||.|...|  ||
 Worm   513 IMYLVEVFISDPVAESPIYRITSEFFLWLGYSNSVLNPIIYTMYNGDFRRCFRDLLSFG 571

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OPN1MW3NP_001316996.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23 5/21 (24%)
Required for 11-cis-retinal regeneration. /evidence=ECO:0000250|UniProtKB:P04001 17..43 6/35 (17%)
7tm_4 61..>178 CDD:304433 26/117 (22%)
7tm_1 71..322 CDD:278431 66/440 (15%)
tyra-3NP_001024805.1 7tmA_tyramine_R-like 101..>300 CDD:320189 43/201 (21%)
TM helix 1 102..126 CDD:320189 4/23 (17%)
TM helix 2 135..157 CDD:320189 8/21 (38%)
TM helix 3 174..196 CDD:320189 3/21 (14%)
TM helix 4 219..235 CDD:320189 4/16 (25%)
TM helix 5 265..288 CDD:320189 5/23 (22%)
7tm_GPCRs <486..564 CDD:391938 19/79 (24%)
TM helix 6 488..518 CDD:341315 9/31 (29%)
TM helix 7 532..557 CDD:341315 5/24 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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