DRSC/TRiP Functional Genomics Resources

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Protein Alignment CDH8 and cdh8

DIOPT Version :10

Sequence 1:NP_001787.2 Gene:CDH8 / 1006 HGNCID:1767 Length:799 Species:Homo sapiens
Sequence 2:XP_002935098.2 Gene:cdh8 / 100486228 XenbaseID:XB-GENE-1002704 Length:810 Species:Xenopus tropicalis


Alignment Length:500 Identity:108/500 - (21%)
Similarity:178/500 - (35%) Gaps:125/500 - (25%)


- Green bases have known domain annotations that are detailed below.


Human   202 EDSNASDPSTEGTSVPGSDTEPLIRTLEEKNKTFQKELADLEEENRALKEKLTYLEQSPN----- 261
            |||        ||.| |..|:...::........|.||.|.|     |||:.|.:..:.|     
 Frog    29 EDS--------GTEV-GEGTDEWAQSKATVRPPDQLELTDAE-----LKEEFTRILTANNPHAPQ 79

Human   262 -------SEGAASHTGDSSCPTSITHESSFGSPVGNELSSETDEYRRNTH------GS------- 306
                   .||.....|      .:...:...:.|||.:..::||.||..:      ||       
 Frog    80 NIVRYSFKEGTYKPIG------FVNQLAVHYTQVGNLIPKDSDEGRRQHYRDELVAGSQESVKVI 138

Human   307 -------------ALRTSGSSSSDVTKASLSPDASDFEHITAD---TPSRPLS-ATSNPFK-SSK 353
                         .|.|...|.:||      |.|...|.:|.:   ||.:|.. ..:|.|. |.:
 Frog   139 SETGNLEEDEEPKELETEPGSQTDV------PAAGAAEKVTEEELMTPKQPKERKLTNQFNFSER 197

Human   354 GSPTGSSPNNASELSLASLTEKIQKMEENQHSTAEELQ---ATLQELSDQQQMVQELTAENEKLV 415
            .|.|.::|....|..    ||...:  .|..:||.:.:   |.::||..     ||.|.|.||  
 Frog   198 ASQTYNNPVRDRECQ----TEPPPR--TNFSATANQWEIYDAYVEELEK-----QEKTKEKEK-- 249

Human   416 DEKT-ILETSFHQHRERAEQLSQENEKLINLLQ-----ERVKNE---EPSAQGGKIL-----ELE 466
             .|| :.:.|......:...:..:.:.||.|.|     ||:.|:   :..||..|..     |..
 Frog   250 -AKTPVAKKSGKMAMRKLTSMESQTDDLIKLSQAAKIMERMVNQNTYDDIAQDFKYYDDAADEYR 313

Human   467 QKCTDILEKSRFEREKLLNIQQQLTC---SLRKVEEENQGAIDMIKH----LKEENEKLSGFLEH 524
            .:...:|...:|:.:|...:.....|   ..|.:.....|:.|.:|.    |...:.|...|.|:
 Frog   314 DQVGTLLPLWKFQNDKAKRLSVTALCWNPKYRDLFAVGYGSYDFMKQSRGMLLLYSLKNPSFPEY 378

Human   525 ERCNNS-VMAKTLEECRVTLEGLKMENGSL------KAHLE---ADKQKAVEASSTMGQTA-ENF 578
            ...:|| ||...:......|..:...:|::      |.|.:   ....|:.:.|..:.|.. :..
 Frog   379 MFSSNSGVMCLDIHVDHPYLVAVGHYDGNVAIYNLKKPHSQPSFCSSAKSGKHSDPVWQVKWQKD 443

Human   579 EVQEMLKVARAEKDQLQLSCTELRQELLKANGEIKHVSSLLAKME 623
            ::.:.|.......|...:|.|.::::|:       |:..:..|:|
 Frog   444 DMDQNLNFFSVSSDGRIVSWTLVKRKLV-------HIDVIKLKVE 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CDH8NP_001787.2 CA 87..165 CDD:214520
Cadherin_repeat 171..272 CDD:206637 21/81 (26%)
Cadherin_repeat 281..387 CDD:206637 31/136 (23%)
Cadherin_repeat 395..492 CDD:206637 25/110 (23%)
Cadherin_repeat 499..602 CDD:206637 22/117 (19%)
CADH_Y-type_LIR 732..790 CDD:460041
cdh8XP_002935098.2 CA 98..176 CDD:214520 18/83 (22%)
Cadherin_repeat 182..>262 CDD:206637 25/93 (27%)
Cadherin_repeat 291..398 CDD:206637 21/106 (20%)
Cadherin_repeat 406..503 CDD:206637 13/82 (16%)
Cadherin_repeat 511..613 CDD:206637
CADH_Y-type_LIR 743..801 CDD:460041
Blue background indicates that the domain is not in the aligned region.

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