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Protein Alignment CCDC169-SOHLH2 and twist2
DIOPT Version :9
Sequence 1: | NP_001185839.1 |
Gene: | CCDC169-SOHLH2 / 100526761 |
HGNCID: | 38866 |
Length: | 502 |
Species: | Homo sapiens |
Sequence 2: | NP_001005956.1 |
Gene: | twist2 / 30395 |
ZFINID: | ZDB-GENE-980526-235 |
Length: | 163 |
Species: | Danio rerio |
Alignment Length: | 85 |
Identity: | 14/85 - (16%) |
Similarity: | 36/85 - (42%) |
Gaps: | 7/85 - (8%) |
- Green bases have known domain annotations that are detailed below.
Human 268 ASLSEFEKNKKISLLHSSKEKLRRERIKYCCEQLRTLLPYVKGRKNDAASVLEATVDYVKYIREK 332
:|...||:.:...:|.:.:|:.|.:.:......||.::|.:...|......|:....|:.::.:.
Zfish 59 SSTQSFEELQNQRVLANVRERQRTQSLNEAFASLRKIIPTLPSDKLSKIQTLKLASRYIDFLCQV 123
Human 333 ISPAVMAQITEALQSNMRFC 352
:. ::.:.:.|..|
Zfish 124 LQ-------SDEMDNKMSSC 136
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
CCDC169-SOHLH2 | NP_001185839.1 |
DUF4600 |
<6..81 |
CDD:292016 |
|
HLH |
283..334 |
CDD:238036 |
8/50 (16%) |
twist2 | NP_001005956.1 |
HLH |
70..120 |
CDD:278439 |
9/49 (18%) |
Blue background indicates that the domain is not in
the aligned region.
|
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
NCBI |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
ZFIN |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.910 |
|
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