DRSC/TRiP Functional Genomics Resources

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Protein Alignment RBM14-RBM4 and SPAC222.18

DIOPT Version :9

Sequence 1:NP_001185774.1 Gene:RBM14-RBM4 / 100526737 HGNCID:38840 Length:339 Species:Homo sapiens
Sequence 2:NP_001343068.1 Gene:SPAC222.18 / 9407033 PomBaseID:SPAC222.18 Length:111 Species:Schizosaccharomyces pombe


Alignment Length:54 Identity:12/54 - (22%)
Similarity:21/54 - (38%) Gaps:15/54 - (27%)


- Green bases have known domain annotations that are detailed below.


Human    57 GHELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDV 110
            |...:||..|               ::.|......::.|...||:.||::.||:
pombe    11 GFNYKPGHTL---------------YIRNFGTDMRARTLGQAFEKWGRIVRCDI 49

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RBM14-RBM4NP_001185774.1 RRM1_CoAA 1..71 CDD:241052 4/13 (31%)
RRM_SF 79..>113 CDD:302621 8/32 (25%)
ZnF_C2HC 136..151 CDD:197667
SPAC222.18NP_001343068.1 RRM_SF 19..94 CDD:327398 9/46 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23147
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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