DRSC/TRiP Functional Genomics Resources

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Protein Alignment RBM14-RBM4 and rbm14

DIOPT Version :10

Sequence 1:NP_001185774.1 Gene:RBM14-RBM4 / 100526737 HGNCID:38840 Length:339 Species:Homo sapiens
Sequence 2:NP_989050.1 Gene:rbm14 / 394647 XenbaseID:XB-GENE-491627 Length:468 Species:Xenopus tropicalis


Alignment Length:425 Identity:130/425 - (30%)
Similarity:185/425 - (43%) Gaps:112/425 - (26%)


- Green bases have known domain annotations that are detailed below.


Human     1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRA 65
            |||||||||.: ||.||:..||..||||::||||||:||||||.:..|.:|:|.|:|.||. |:.
 Frog     8 MKIFVGNVDDS-TTQEEITELFERYGTVVNCAVMKQYAFVHMRGSEEATKAVEDLNGRELN-GKK 70

Human    66 LVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDV-------------------- 110
            ::||:|:|||.|||||||||||::|...|:|.:||..|||:|||:                    
 Frog    71 MLVELSKPRPQNTWKIFVGNVSSSCEVSEIRKMFEEHGRVVECDIVKDYAFVHMTRESESRAAIE 135

Human   111 ------VKGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRSGRVADLTEQYNEQY 169
                  |||||::|::| .::|.....|...           |:..|.||  ......|.||.:.
 Frog   136 ALNGKEVKGKRINVEMS-HKVRPVAANGSSH-----------SRRRPDDR--EAPQSRESYNHRR 186

Human   170 G--------AVRTPYTMSYGDS----LYYNNAYGALDAYYKRCRA---------------ARSYE 207
            .        |:::.|.....:|    ||.:........||.|.|:               |..|.
 Frog   187 ATEAAYASYALKSNYERYAPESSRYDLYESRPRPTSPMYYARDRSPMRRPDYALSQTAALASKYR 251

Human   208 AVAAA---AASVYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAA----TAAAAA 265
            :.||.   .||.|:.....|:.....|.:|:||        .|:.....||.|:.    ..||.:
 Frog   252 SEAAGFGNLASGYSGQASALASSYSNQASALAS--------SYNNQRAYTSSASGYGTDQIAAYS 308

Human   266 AAAAAVTAASTSYYGRDRSPLRR--------------ATAPVPTV-----GEGYGYGHESELSQA 311
            ...:|.....:|.||...:.|..              |::.||:.     |..|.....:.|.|.
 Frog   309 TQPSAYANQGSSIYGTQAASLASSYGSQPSHLSASPYASSVVPSAYRQQQGSAYETTQLASLGQQ 373

Human   312 SAAARNSLYDMARYE------REQY---ADRARYS 337
            :..:.|.:|:..|..      .:.|   ||..||:
 Frog   374 TMPSTNPMYERTRLSPPRAAISDSYKKAADIQRYA 408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RBM14-RBM4NP_001185774.1 RRM1_CoAA 1..71 CDD:410020 41/69 (59%)
RRM_SF 79..>113 CDD:473069 21/59 (36%)
PTZ00368 <120..>156 CDD:173561 7/35 (20%)
ZnF_C2HC 136..151 CDD:197667 1/14 (7%)
rbm14NP_989050.1 RRM1_CoAA 8..76 CDD:410020 41/69 (59%)
RRM2_CoAA 84..151 CDD:410021 26/66 (39%)

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