DRSC/TRiP Functional Genomics Resources

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Protein Alignment RBM14-RBM4 and lark

DIOPT Version :10

Sequence 1:NP_001185774.1 Gene:RBM14-RBM4 / 100526737 HGNCID:38840 Length:339 Species:Homo sapiens
Sequence 2:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster


Alignment Length:372 Identity:110/372 - (29%)
Similarity:150/372 - (40%) Gaps:114/372 - (30%)


- Green bases have known domain annotations that are detailed below.


Human     2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRAL 66
            |:|:||:| ..|...||.|||..||||:.|.|:|.:.||||........||:.|:|:.|.. .|:
  Fly     8 KLFIGNLD-EKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYTLNE-FAI 70

Human    67 VVEMSRPR-----PLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-------------- 112
            .||.::.|     |  |.||||||::....:.|:|.||::.|.|:|||:|:              
  Fly    71 KVEAAKSRRAPNTP--TTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQ 133

Human   113 ------------GKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRSGRVADLTEQY 165
                        |:.:.||:||||:|..|||||...|||||:.||||||||           ..|
  Fly   134 DAIKELNGRVVDGQPLKVQVSTSRVRPKPGMGDPEQCYRCGRSGHWSKECP-----------RLY 187

Human   166 NEQYGAVRTPYTMSYGDSLYYNNAYGALDAY--------YKRCRAARSYEAVAAAAASVYNYAEQ 222
            ....|....|..:|.|.  |.:..||. |.|        :.|.|....:..        |:|.::
  Fly   188 GSAGGGREPPSPLSAGG--YRDRMYGR-DPYPPPPPPPPFLRDRIMDGFRD--------YDYYDR 241

Human   223 TLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTAASTSYYGRDRSP-- 285
            ....                |.|.|:|..                       .||.. ||..|  
  Fly   242 RFED----------------SRDLYERRY-----------------------QTSRM-RDFPPPP 266

Human   286 -LRRATAPVPTVGEG------YGYGHESELSQASAAARNSLYDMARY 325
             .||...|:|....|      ...|:::..|:.|.....|...|:||
  Fly   267 ISRREPMPLPPTLSGSLRSCSVSRGYDTMFSRRSPPPPRSSNGMSRY 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RBM14-RBM4NP_001185774.1 RRM1_CoAA 1..71 CDD:410020 30/68 (44%)
RRM_SF 79..>113 CDD:473069 16/59 (27%)
PTZ00368 <120..>156 CDD:173561 23/35 (66%)
ZnF_C2HC 136..151 CDD:197667 11/14 (79%)
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 28/66 (42%)
RRM1_2_CoAA_like 87..152 CDD:409779 17/64 (27%)
hnRNP-R-Q <88..>258 CDD:273732 60/230 (26%)

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