Sequence 1: | XP_004918574.2 | Gene: | chd6 / 100498254 | XenbaseID: | XB-GENE-5964535 | Length: | 2667 | Species: | Xenopus tropicalis |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001137761.1 | Gene: | kis / 33185 | FlyBaseID: | FBgn0266557 | Length: | 5517 | Species: | Drosophila melanogaster |
Alignment Length: | 3528 | Identity: | 1067/3528 - (30%) |
---|---|---|---|
Similarity: | 1494/3528 - (42%) | Gaps: | 1150/3528 - (32%) |
- Green bases have known domain annotations that are detailed below.
Frog 62 NVLYPDSGQEECLAVEATSINGMENSGGGGTGVKKKRKKKEP--------------------GEE 106
Frog 107 KVAKPKKKKEPKKVKEPKKVKEPSEAKDPKEQKQPKSPKEPKKPRK--------------PREPK 157
Frog 158 PPKQK---KANQDSAAKTKPKK---LSKEQGPTP---LEKKKKGKR---------KAEFSEE-SL 203
Frog 204 DGEPSLLNPASQSTEESTESLDSQKRRSGRQVKRRKYNEDLDFKVVDDDGETIAVLGAGRASALS 268
Frog 269 ASTLAWQAEEPPEDDANIIERILSSRISQKEFMHAGIPLEVEEFYVKYRNFSYLHCKWATLEELE 333
Frog 334 K-DPRIQQKIKRFRNKQAQMKHIFTEPDEDMFNPDYVEVDRVLEVAHTKDSDTGEVREVTHFLVK 397
Frog 398 WCSLPYEESTWELEEDVDPVKVKEFEALQKVP---DLTPMERPASETWQKLVSSRTYKNNNQLRE 459
Frog 460 YQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFFMGIRGPFLIIAPLSTITNWEREF 524
Frog 525 RTWTEMNTIVYHGSQISRQMIHQYEMYYRDEQGTPIPGIYKFQIVITTFEMILADCPELKKIRWS 589
Frog 590 CVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELYSLLNFLEPVQFPSESTFLEE 654
Frog 655 FGDLKTEEQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFTFLT 719
Frog 720 KGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKRHSPDALDFQLQAMIQAAGKLVLI 784
Frog 785 DKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYIYERIDGRVRGNLRQAAIDRFCKPDSDRF 849
Frog 850 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMF 914
Frog 915 DKASLKLGLDKAVLQDINRKGNTNG-VQPLSKIEVEDLLRKGAYGALMDEEDEGSKFCEEDIDQI 978
Frog 979 LQRRTQTITIQSEGKGSTFAKASFVSSGNRTDISLDDPNFWQKWAKIAELDTDA--RNEKESLVL 1041
Frog 1042 DRPRVRKQTKHYNSFEDDELMEFSELESDTEERP------TRSRRLNDKTRR------------- 1087
Frog 1088 -----------------YLRAECFRVEKNLLIFGWGRWKDILNLGRFKWHLNEKDMEMICRALLV 1135
Frog 1136 YCVKHYKGDEKIKSFIWDLITPTKDGHNQAL-QNHSGLSAPVPRGRKGKKLKNQM---------- 1189
Frog 1190 --------LLPEIK--------------NADWLASCNPEIVLHD-----------------DSYK 1215
Frog 1216 KHLKQHCNKVLLRVRMLYYLKAEVLGEAASRALEGENARDLEVL---LPDIDYVEIPVDWWDTE- 1276
Frog 1277 ADKSLLLGVYKHGYERYFAMRADPALCFLDKVG------------MP------------------ 1311
Frog 1312 ---------DETSLT------------------------ADGVND-------------------- 1323
Frog 1324 -------------------VAPELGDGSAIKEENNEEKVNE-----------------------Q 1346
Frog 1347 QEDASESTGKEEKADEESSIVENIQAQDSP--------------EADKLS--------------- 1382
Frog 1383 -----------------------------------------------------------WPVASA 1388
Frog 1389 LTARLRRLITVYQRCNRRD------LARPEVLV-----------PTNHSYWLQ------------ 1424
Frog 1425 ----------------------------------------------------------------- 1424
Frog 1425 ----------------------------EEMARRAEMDPIMKEMQ--------KRWTRREQADFY 1453
Frog 1454 RTVSSFGV---IYDP------EKKCFDWTQFRALSRLDKKTDESLEKYFHSFVAMCRNVCRLPLR 1509
Frog 1510 KDDGSADPSLFLDPITEERAARTLYRIELLRKVREQVLRHPQLHDRLKLCRPSLYLPVWWECGKH 1574
Frog 1575 DRDLLIGTAKHGLSRTDYYIMNDPQLSFLDAYRNYAQNKRNSGENMCYHFQMNSKVQETPSCHLE 1639
Frog 1640 RTCESTKL-KPEKDIKTEVEEATTSNQMCSPPDLTCENFISQVGDMISNNHDECSMSDSLMCMIC 1703
Frog 1704 DEKTCNSALLDASNSEQSSLTQESFLGLEAKNGPTDYSLN-KAKEDNILP-------VEESV--- 1757
Frog 1758 ----SRDCFLGSSEKDEPMEGIDRINE-PFGDSGSHLGLAAEDCEKAQVDAIGQRDLDDDNFCTS 1817
Frog 1818 LSQTAEQSLGLDLEFLDKTFGDHSALSPGINE--------DKDCGITGEHSEGPHLNPMPVQEKE 1874
Frog 1875 EWGADLQELKEDPIVKWQNELNDMKDPPLEDVIKDHKLEDLSIEKDSSTSKGSYGIPSLQVNECL 1939
Frog 1940 DMKHKTSLMLSGLLKQKVEDLKERIAGENVLEESNVPLEENETIKLEECEVKKEVKKESVEEECN 2004
Frog 2005 CKDYLDKYTEDDVKACPLSVPEESHQDFQDGRAPTIAQLLQEKTLYSFS--EWPKDRVIINRIDN 2067
Frog 2068 ICHAVLKGKWPSSSQQFE-AQCMVPSSV----------LSTCTRSSSYP---------------- 2105
Frog 2106 ------AEAQSIAYSNGSPVPQ-AQKEPLSAATFPNEE--------------------------- 2136
Frog 2137 ------------------------------RKHRRPFEFDSERQDGKLRGL-------------- 2157
Frog 2158 ----EHLSPSHGR----TNSALNGWRDAA----IELCREQAAGGGSSYP----MNTSTPKIAGIG 2206
Frog 2207 GLQSSL----------------GMDLSGILQAGL------IH-------PVTG------QIVNGS 2236
Frog 2237 LRRDESSLRR----RRGRRKNVEGMDLGF--------LKDRGMHAG------------------- 2270
Frog 2271 ----------ILGLREVPNQLGSGHTESSL----SASARSGVPG--------------------- 2300
Frog 2301 --------------------------------------AKFQPEKVISNK---------SLLEWL 2318
Frog 2319 RQQSDCT--------IDIPTYGG-SFSDKPKPRR----------------------------QRC 2346
Frog 2347 KEPSKPEFSLLAGDDRVSLVNKDTGQQ--------------------GFLPESKFGRALPEPLMH 2391
Frog 2392 ETMPR--------------RRGRRPRSELLKSTGTM--------------GSDSSSGMGPLFMNG 2428
Frog 2429 LIAGMDIVGLQNMRNMQGIPLTGLVGFPAGFTAVSTNEEMKS------TLSMLPMMLPGMAAMP- 2486
Frog 2487 -----------QMFGVGGIIN----------SPMATSVPTSLGSTIKSGSSHPDK--------AT 2522
Frog 2523 EDKDACPETKPD--------------TAPSDKPSGSFQEKSEPAVTTSSPVAFN-PFLIPGMSPS 2572
Frog 2573 LLYPSMFLSPGIGMAIPGVQPNRLSESG---GIDHQRRRRKKTKGETQTSEQETVPFTESTESER 2634
Frog 2635 LSPEAQNCDTDNTPAPEN 2652 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
chd6 | XP_004918574.2 | CD1_tandem_CHD5-9_like | 281..347 | CDD:349315 | 27/66 (41%) |
CD2_tandem_CHD5-9_like | 366..426 | CDD:349310 | 30/59 (51%) | ||
PLN03142 | 456..>981 | CDD:215601 | 370/525 (70%) | ||
DEXHc_CHD6 | 457..678 | CDD:350816 | 144/220 (65%) | ||
kis | NP_001137761.1 | BASP1 | 1554..1786 | CDD:283191 | 32/156 (21%) |
HepA | 1676..2527 | CDD:223627 | 473/903 (52%) | ||
SDA1 | <1693..>1854 | CDD:283052 | 40/169 (24%) | ||
CHROMO | <1879..1919 | CDD:237991 | 26/39 (67%) | ||
Chromo | 1941..1996 | CDD:278797 | 29/56 (52%) | ||
DEXDc | 2048..2197 | CDD:238005 | 94/148 (64%) | ||
Helicase_C | 2350..2464 | CDD:278689 | 96/113 (85%) | ||
RR_TM4-6 | 3728..>3877 | CDD:283990 | 37/193 (19%) | ||
BRK | 4569..4613 | CDD:197800 | 7/43 (16%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 564 | 1.000 | Domainoid score | I232 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 1491 | 1.000 | Inparanoid score | I105 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0001075 | |
OrthoInspector | 1 | 1.000 | - | - | otm47615 | |
Panther | 1 | 1.100 | - | - | O | PTHR45623 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 1 | 1.000 | - | - | X648 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
8 | 8.060 |