DRSC/TRiP Functional Genomics Resources

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Protein Alignment ppef1 and rdgC

DIOPT Version :9

Sequence 1:XP_031752607.1 Gene:ppef1 / 100496625 XenbaseID:XB-GENE-6037564 Length:700 Species:Xenopus tropicalis
Sequence 2:NP_536738.3 Gene:rdgC / 40224 FlyBaseID:FBgn0265959 Length:746 Species:Drosophila melanogaster


Alignment Length:677 Identity:270/677 - (39%)
Similarity:382/677 - (56%) Gaps:91/677 - (13%)


- Green bases have known domain annotations that are detailed below.


 Frog    20 KSEKAIKAAILIQRWYRFYTARLEMRRRYTLNIFQSIEYAEEQAQLQLSNFFTFMMDHFAHWKGQ 84
            ::||.|:|||.||:|||.:.||.||:||....|||::|||.||.|.:|..||..::.|.....|:
  Fly    86 RAEKTIRAAIFIQKWYRRHQARREMQRRCNWQIFQNLEYASEQDQAELYKFFNDLIKHMPQAAGR 150

 Frog    85 GPDLISDISNSKEG--HKFIDYEKIEVPNSYG---GPRITFPLTVSDTNALLRAF--KQGQQLHA 142
                    .|..:|  |..:..:|.::...:|   ..:|..|:..:..:.|:..|  |:|.:||.
  Fly   151 --------KNQYQGSAHVSVLDDKDDLVEEFGDIVNAKIELPIRKNHIDLLIDVFRKKRGNRLHP 207

 Frog   143 RYVLQLFHETKKFLKQLPNIVHLSTSYSKEITICGDLHGKLDDLLLIFYKNGLPSTENHYLFNGD 207
            :||..:..|..|.|||||||..:||:.|:::|:||||||||||||::.:||||||:.|.|:||||
  Fly   208 KYVALILREAAKSLKQLPNISPVSTAVSQQVTVCGDLHGKLDDLLVVLHKNGLPSSSNPYVFNGD 272

 Frog   208 LVDRGKNSIEILVLLFTFLLMYPNNVHINRGNHEDPIMNLRYGFTNEVIQKYKGHARNILLLLED 272
            .|||||..:|:|:||.:..|.:||.|.:|||||||.:||.||||..||..||..:.:.||..:::
  Fly   273 FVDRGKRGLEVLLLLLSLYLAFPNAVFLNRGNHEDSVMNARYGFIREVESKYPRNHKRILAFIDE 337

 Frog   273 IYSRLPLATIVDSKVLILHGGIGDKTDLDFLSSIDRFKYKSALRTPKTDSEKCTSRDKMLDGKNK 337
            :|..|||.::::|:|||:|||..|.|.||.:.||||.||.|.||.|.||.|.       ||    
  Fly   338 VYRWLPLGSVLNSRVLIVHGGFSDSTSLDLIKSIDRGKYVSILRPPLTDGEP-------LD---- 391

 Frog   338 KSSVDVGANQNRANKHMTTSSNISQNRSQQGFRSPGILEINYMDSRIQLPDKMPELPDSIRKEWK 402
                                                                        :.||:
  Fly   392 ------------------------------------------------------------KTEWQ 396

 Frog   403 QVVDILWSDPRNQNGCTPNSFRGGGCYFGPNVTKKLLAKYNFKMLIRSHECKQEGYELCHNGKVV 467
            |:.||:||||:...||.||:.||.|.:|||:||...|.::....:|||||||..|:|..|:.|::
  Fly   397 QIFDIMWSDPQATMGCVPNTLRGAGVWFGPDVTDNFLQRHRLSYVIRSHECKPNGHEFMHDNKII 461

 Frog   468 TIFSASNYYDEGSNRGAYLKLSPDLTPRFVPY-QVSKCTRKLTLHQRVSAVEDTALRALREKIYA 531
            |||||||||..|||:|||::|:..|.|.||.| ..:..|::|:..||:..||.:||:.|..::..
  Fly   462 TIFSASNYYAIGSNKGAYIRLNNQLMPHFVQYISAASQTKRLSFKQRMGIVESSALKELAVRMRD 526

 Frog   532 HRSELINAFKLCDPKETGKISISEWASAVEAVLHLDLPWRTLRPRLIKLTSDGSVDYLSSFEDLQ 596
            ||.||.:.|:..|||::|.||||.|...:|.|..|.||||.||.:|...|....|:|..:. ||.
  Fly   527 HRDELEDEFRKYDPKDSGYISISHWCKVMENVTKLGLPWRLLRDKLAPGTDSQKVNYNRTL-DLL 590

 Frog   597 IEQPIKEVQP---NLVETIYRYKADLEIIFNIIDKDHSGLISVEEFRQTWKLFSSHLHINIDDSA 658
            ....|.|.:.   ::::.:|..||.|..||||||.|:||.|:::||.....|..:|:......:.
  Fly   591 DTDVILEAEADGMSVMDALYANKASLVAIFNIIDADNSGEITLDEFETAIDLLVAHMPGAYSKAE 655

 Frog   659 IDDLAHSIDTNKDGSIDFNEFLEAFRV 685
            :.:....:|.|.||.:|.||||||||:
  Fly   656 MLEKCRMMDLNGDGKVDLNEFLEAFRL 682

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ppef1XP_031752607.1 MPP_superfamily 121..500 CDD:417454 162/381 (43%)
FRQ1 535..683 CDD:227455 57/150 (38%)
EF-hand_7 616..684 CDD:404394 28/67 (42%)
rdgCNP_536738.3 IQ 89..111 CDD:197470 13/21 (62%)
MPP_RdgC 184..494 CDD:277364 161/380 (42%)
EFh 616..681 CDD:238008 26/64 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 183 1.000 Domainoid score I3378
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 520 1.000 Inparanoid score I1245
OMA 1 1.010 - - QHG59402
OrthoDB 1 1.010 - - D215218at33208
OrthoFinder 1 1.000 - - FOG0000018
OrthoInspector 1 1.000 - - oto105044
Panther 1 1.100 - - O PTHR45668
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3052
SonicParanoid 1 1.000 - - X2939
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.110

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