DRSC/TRiP Functional Genomics Resources

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Protein Alignment arhgap11a.2 and cv-c

DIOPT Version :9

Sequence 1:XP_012824473.1 Gene:arhgap11a.2 / 100495220 XenbaseID:XB-GENE-5843957 Length:804 Species:Xenopus tropicalis
Sequence 2:NP_001097786.1 Gene:cv-c / 41749 FlyBaseID:FBgn0285955 Length:2351 Species:Drosophila melanogaster


Alignment Length:467 Identity:121/467 - (25%)
Similarity:185/467 - (39%) Gaps:101/467 - (21%)


- Green bases have known domain annotations that are detailed below.


 Frog    25 KKVPSPDVQRKTSSHGLFGTPLHCLPPCNTEG-NIPQFVVDTCQFLSCH-LGTEGLFRKSGSVTR 87
            ||:..||.:.|.    :||.||  |......| .:|..|....::|..: |...|:|||||..:|
  Fly  1884 KKIKMPDYKDKK----VFGVPL--LMILQRSGQTLPLAVRAAFRWLQLNALDQVGIFRKSGGKSR 1942

 Frog    88 IRTLKAQLESNECSLES------AQPSDVAALLKQFFRELPQPLIPLELQDPLCQIHEILSEESR 146
            |..|:.|:|..:.:.|.      .|..|||.:|||:|||||:.|:..::.:....|.:.|..|.|
  Fly  1943 IMKLREQIEVTDSTAECMDVFDLQQAYDVADMLKQYFRELPESLLTTKMSETFVAIFQHLPAEVR 2007

 Frog   147 VSATILVTCLLPAIHMGTLRYFCTFLQSVASRCNENRMDSANLAVVLAPNLFAST---------- 201
            :.|......|||..:...|.....||..||:...:|:|.|.||.|.||.::|.|:          
  Fly  2008 LDAVQCAVLLLPDENREILYVLLEFLTIVAANSQQNQMTSNNLGVCLAQSIFHSSISTGSASVSA 2072

 Frog   202 -------GLG--------------ERLTHSTERQLQLQTAVMQTLIQNASNIGQLPSFILSKIPL 245
                   |.|              |.|:...|...|:.||..:.|  :..|.    |::....||
  Fly  2073 SPRRKGKGSGMPDMKELAEAKASHECLSFMIEHYKQIYTAAKEKL--SKCNF----SYMEESKPL 2131

 Frog   246 AHDAVEEEL--------------VTPSGGVNRRRRRRSMSGLVNEA--LSKLKPGRGASTNVLDQ 294
            ..:|:.|.:              .|...|..:.|...|::.|.:.:  ::..|.|.|....:...
  Fly  2132 PLEALGEGMQFHNWRGYLYECTSATIKEGREKTRGWFSINSLNDSSVDIAYKKVGDGHPLRLWRC 2196

 Frog   295 ATGEEGQHE---RYKSKRKASEDSGSGEHCTAKKRKSLRDITDEKLY------NEDLC--EPVNS 348
            :|..||..:   .:..|::||.|:...:..|.||   |.|.|:...|      ..|.|  ....:
  Fly  2197 STEIEGPPKEVLEFVIKQRASWDTNLLQCQTVKK---LDDRTEIYQYALDGQLTTDFCVLRSWQT 2258

 Frog   349 VSPQRVFVDASPDLLSSPSTPLELSTGSPAILAT-----PESSSRGQ-------RVKGKRKE--S 399
            ..|:...|.....:..:.:.|| .......:||:     |..|.|.:       .||||..|  :
  Fly  2259 DLPRGACVIVETSIDHAKAKPL-FGAVRGVVLASRYLIEPCGSGRSRVMHLARVDVKGKTPEWYN 2322

 Frog   400 KRPKRMHSGHIC 411
            |     :.||||
  Fly  2323 K-----NYGHIC 2329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
arhgap11a.2XP_012824473.1 RhoGAP-ARHGAP11A 41..240 CDD:239859 69/237 (29%)
cv-cNP_001097786.1 SAM_DLC1,2-like 1382..1441 CDD:188937
RhoGAP_DLC1 1893..2116 CDD:239840 67/228 (29%)
SRPBCC 2148..2343 CDD:301327 43/191 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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