DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stard8 and cv-c

DIOPT Version :9

Sequence 1:XP_004916864.1 Gene:stard8 / 100494346 XenbaseID:XB-GENE-992346 Length:1049 Species:Xenopus tropicalis
Sequence 2:NP_001097786.1 Gene:cv-c / 41749 FlyBaseID:FBgn0285955 Length:2351 Species:Drosophila melanogaster


Alignment Length:1125 Identity:377/1125 - (33%)
Similarity:562/1125 - (49%) Gaps:206/1125 - (18%)


- Green bases have known domain annotations that are detailed below.


 Frog     7 LNRSYFKDRASKTWQRLRRRLSAPLELDLEAKKACDWLRAAGFPQYAQLYEDSQFPVDISCVKRD 71
            ::|.:....|.....|..|..|.....::||.:||.||||||||||||:|||.|||:|::.|.:|
  Fly  1351 MSRRFDNFEAQHLTLRYSRSQSDRYLAEIEAVEACKWLRAAGFPQYAQMYEDHQFPIDLNNVAKD 1415

 Frog    72 HSFLDEDSLKSLCRRLMTLNSCAPMKLEVHYR----KQNEDSDEDDQCAISDRWAFQRDQGRWSR 132
            |:.|:.|.|:||.|||..||.||.|:|:..::    :|.|:|| |:..|:|:.|.||....||||
  Fly  1416 HTNLENDQLQSLYRRLCVLNRCATMRLDQSHKPQTPQQKEESD-DENFALSEHWTFQPHIRRWSR 1479

 Frog   133 LDSVELLSPTYAGPPTIKSTSSRDSILTDLSTELEATSLQSAGSS-----RGGLDIVVIPPQGMS 192
            :..:.|..|    ||.:            ||..:|.|...|..||     ..|..|.::.| |.|
  Fly  1480 IGEMGLELP----PPGL------------LSLNVEKTESSSKESSPDRFEEDGAGITLVTP-GCS 1527

 Frog   193 SVSSSPAPSKPCRSLSDQSLAPQRRGLKEKTKKRKTRGFLKRMESLR-RREKDKGKKEV------ 250
            .....|.........||....  ||...|:.|. :.:..|:|:||:: ||.|.:.::.|      
  Fly  1528 KAGGIPNDGSSLGEGSDSGRL--RRSGSERIKD-QAKALLRRVESIKSRRRKRQNRENVVISGPT 1589

 Frog   251 -----------------------PSDSALDDSGRETLSYANHCADDGDFPVFEKDFLHPGYRTKC 292
                                   ||.|||  |...|...|....:|...|....:||.|      
  Fly  1590 VLDLSQFGQRSSLRKPDAVYSTPPSPSAL--SPMHTFPKAPFFGNDLKVPSHSDNFLSP------ 1646

 Frog   293 ASSGSIRKPHLDGQCRGVYLEDFEMVRKDGIRQRNSQKSDRLVCIPTDHKPGTFPRALSIESLCP 357
                                            .|:|.|           :..|.||::....|..
  Fly  1647 --------------------------------NRSSPK-----------RTPTTPRSMRTSPLHF 1668

 Frog   358 ASRVPLESWKMGSKSLGQSVCSSMDSHGLEGRPRRGSYSSIGSRSSIYDNVPCSLSGSGDHLEL- 421
            .|. |:...|.|         .|.||         .||.|....||           :|..|.| 
  Fly  1669 FSS-PMSQLKEG---------KSDDS---------SSYYSDSQESS-----------TGGKLSLR 1703

 Frog   422 ------------GGSSDLFGHLDDVLNHVRGLQRMVELWSRTVCPELDEGTDSGGEQAGHLAYEE 474
                        |...|:..|.|...:..|.| .:.:..|.|...::.:.|..|....|    ::
  Fly  1704 KPSKARRFLQRTGKVDDIGAHSDSECHQGRKL-LIKDANSNTTEVKVKKLTRGGSLNLG----KD 1763

 Frog   475 RSISDVGTSASDFDSTGNSLNETEENEMRERRDSGVGASLTRPCRKLRWHSFQNSHRPSL----- 534
            ....| |..:|.|.|...|..|.:.:|......:. |.|..:|.  :||||||...||::     
  Fly  1764 PKKRD-GFRSSSFRSRSTSRKEAKNDEDTAGATTN-GGSKRQPV--VRWHSFQMEERPNMIFRKC 1824

 Frog   535 ----------SSASLEINRQSAAQLNLLQKLSLLRLTAIMEKHSVPSKQGWAWTVPKFMKRSKVP 589
                      .:..:.....||.||.:::||:|:.||..||::....:.||.|.:|||:|:.|:|
  Fly  1825 FSKKIEPLQEDAGGMPFAAMSAGQLQIIRKLALVTLTGHMERYCPSHRSGWNWELPKFIKKIKMP 1889

 Frog   590 DYRGRAVFSVPPIINVQRTGQPLPQSIQQAMRYIRSQCLDQVGIFRKSGVKSRIQALRQMNESSP 654
            ||:.:.||.||.::.:||:||.||.:::.|.|:::...|||||||||||.||||..||:..|.:.
  Fly  1890 DYKDKKVFGVPLLMILQRSGQTLPLAVRAAFRWLQLNALDQVGIFRKSGGKSRIMKLREQIEVTD 1954

 Frog   655 DHVSYVG----QSAYDVADLLKQYFRDLPEPIFTSKLTDTFLQIYQYVPKEQRLRAVQAAILLMP 715
            .....:.    |.||||||:||||||:|||.:.|:|:::||:.|:|::|.|.||.|||.|:||:|
  Fly  1955 STAECMDVFDLQQAYDVADMLKQYFRELPESLLTTKMSETFVAIFQHLPAEVRLDAVQCAVLLLP 2019

 Frog   716 DENREVLQTLLYFLSDI-SSAQINQMTPGNLAVCLAPSLFHLNISKKETS---SPRVMHRRGT-S 775
            |||||:|..||.||:.: :::|.||||..||.||||.|:||.:||....|   |||   |:|. |
  Fly  2020 DENREILYVLLEFLTIVAANSQQNQMTSNNLGVCLAQSIFHSSISTGSASVSASPR---RKGKGS 2081

 Frog   776 GKPGHKDLSENLAATQGLLHMITECKKLFQIPHDMMLQSRNSYVAADAHPLSLEELAGVSEGEPQ 840
            |.|..|:|:|..|:.:.|..||...|:::....:.:.:...||: .::.||.||.|     ||..
  Fly  2082 GMPDMKELAEAKASHECLSFMIEHYKQIYTAAKEKLSKCNFSYM-EESKPLPLEAL-----GEGM 2140

 Frog   841 ELSS---VLDNSIQSLLQESVERFKGWVTMSS--PENTELSCKKLGDGNPLRVWKVSTEVEAPPS 900
            :..:   .|.....:.::|..|:.:||.:::|  ..:.:::.||:|||:|||:|:.|||:|.||.
  Fly  2141 QFHNWRGYLYECTSATIKEGREKTRGWFSINSLNDSSVDIAYKKVGDGHPLRLWRCSTEIEGPPK 2205

 Frog   901 SLLHRVLRERHLWDDDLLQGKVLETLGQNTEIFHYVTDTMAPHPRRQFLVLRKWRTDLPRGGCLL 965
            .:|..|:::|..||.:|||.:.::.|...|||:.|..|...   ...|.|||.|:||||||.|::
  Fly  2206 EVLEFVIKQRASWDTNLLQCQTVKKLDDRTEIYQYALDGQL---TTDFCVLRSWQTDLPRGACVI 2267

 Frog   966 VSTSIDHS-TRQLDEGVQAVILSSQYLMEPCGMGRSKLTYICRTDLRGRSPDWYNKVFGHLCAME 1029
            |.|||||: .:.|...|:.|:|:|:||:||||.|||::.::.|.|::|::|:||||.:||:|:..
  Fly  2268 VETSIDHAKAKPLFGAVRGVVLASRYLIEPCGSGRSRVMHLARVDVKGKTPEWYNKNYGHICSHY 2332

 Frog  1030 IARIRNSFPPLNPCGPETQL 1049
            ::|||.:|..:.. |||:::
  Fly  2333 LSRIRLAFKHVAD-GPESKV 2351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stard8XP_004916864.1 SAM_DLC1,2-like 38..97 CDD:188937 36/58 (62%)
RhoGAP_DLC1 594..810 CDD:239840 106/224 (47%)
SRPBCC 836..1040 CDD:387369 84/209 (40%)
cv-cNP_001097786.1 SAM_DLC1,2-like 1382..1441 CDD:188937 36/58 (62%)
RhoGAP_DLC1 1893..2116 CDD:239840 106/225 (47%)
SRPBCC 2148..2343 CDD:301327 82/197 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 200 1.000 Domainoid score I2979
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001209
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12659
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X752
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.100

Return to query results.
Submit another query.