DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment myo5b and Mhc

DIOPT Version :9

Sequence 1:XP_031750785.1 Gene:myo5b / 100379760 XenbaseID:XB-GENE-988439 Length:1835 Species:Xenopus tropicalis
Sequence 2:NP_001162991.1 Gene:Mhc / 35007 FlyBaseID:FBgn0264695 Length:1962 Species:Drosophila melanogaster


Alignment Length:2072 Identity:552/2072 - (26%)
Similarity:894/2072 - (43%) Gaps:490/2072 - (23%)


- Green bases have known domain annotations that are detailed below.


 Frog     7 YSQYTRVWIPDPEDVWRSAEIIKDYKEGDKSLQLK-LEDESVIQHRVDPNNLPHLRNPDILVGEN 70
            |......||||.::.:...| ||..|....|:.|: .|...:...:|:..|.|.....:      
  Fly    32 YDSKKSCWIPDEKEGYLLGE-IKATKGDIVSVGLQGGEVRDIKSEKVEKVNPPKFEKIE------ 89

 Frog    71 DLTALSYLHEPAVLHNLKVRFLESNHIYTYCGIVLVAINPYQQLPVYGEDVIYAYSGQNMGDMDP 135
            |:..::.|:.|.|||||:.|:. :..||||.|:..||||||::.|||.......|.|:...::.|
  Fly    90 DMADMTVLNTPCVLHNLRQRYY-AKLIYTYSGLFCVAINPYKRYPVYTNRCAKMYRGKRRNEVPP 153

 Frog   136 HIFAVAEEAYKQMARDEKNQSIIVSGESGAGKTVSAKYAMRYFATVGGS-------ASEANVEEK 193
            ||||:::.||..|..:..|||::::||||||||.:.|..:.||||||.|       .|:.::|::
  Fly   154 HIFAISDGAYVDMLTNHVNQSMLITGESGAGKTENTKKVIAYFATVGASKKTDEAAKSKGSLEDQ 218

 Frog   194 VLASSPIMEAIGNAKTTRNDNSSRFGKYIQIGFDKRYHIIGANMRTYLLEKSRVVFQADMERNYH 258
            |:.::|::||.|||||.||||||||||:|:|.|.....:.||::.||||||:||:.|..:||:||
  Fly   219 VVQTNPVLEAFGNAKTVRNDNSSRFGKFIRIHFGPTGKLAGADIETYLLEKARVISQQSLERSYH 283

 Frog   259 IFYQLCASASLPEFSELSLAEAEEFFY--TNQGGDPVIDGVDDAEDFEKTRQAFTLLGVKETHQM 321
            ||||: .|.|:|...::.|.....:.|  .:| |...:..:||||:|..|.|||.:||..:..:.
  Fly   284 IFYQI-MSGSVPGVKDICLLTDNIYDYHIVSQ-GKVTVASIDDAEEFSLTDQAFDILGFTKQEKE 346

 Frog   322 GIFKIVASILHLGNVAI-------QTEREGESCNLSKGDKHLTHFCSLLGLEQDQMQHWLCHRKL 379
            .:::|.|:::|:|.:..       |.|::||    .:|.:    ...|.|.:..::...|...::
  Fly   347 DVYRITAAVMHMGGMKFKQRGREEQAEQDGE----EEGGR----VSKLFGCDTAELYKNLLKPRI 403

 Frog   380 VTTSETYVKTMSAEQAVNARNALAKHIYAQLFNWIVQHVNKALHTTIKQHSFIGVLDIYGFETFE 444
            ...:|...:..:.:|..|:..||.|.::.:||.|:|:..|:.|.|..|:..|||||||.|||.||
  Fly   404 KVGNEFVTQGRNVQQVTNSIGALCKGVFDRLFKWLVKKCNETLDTQQKRQHFIGVLDIAGFEIFE 468

 Frog   445 INSFEQFCINYANEKLQQQFNSHVFKLEQEEYMKEQIPWTLIDF-YDNQPCIDLIEAKLGILDLL 508
            .|.|||.|||:.||||||.||.|:|.||||||.:|.|.|..||| .|...||||||..:|||.:|
  Fly   469 YNGFEQLCINFTNEKLQQFFNHHMFVLEQEEYKREGIDWAFIDFGMDLLACIDLIEKPMGILSIL 533

 Frog   509 DEECKVPKGTDQNWAQKLYDRH-GSSQHFKKPR-----MSNVAFIVVHFADQVEYQCDGFLEKNR 567
            :||...||.|||.:::||.:.| |.|..|:||:     .....|.:.|:|..|.|...|:||||:
  Fly   534 EEESMFPKATDQTFSEKLTNTHLGKSAPFQKPKPPKPGQQAAHFAIAHYAGCVSYNITGWLEKNK 598

 Frog   568 DTVYEEQINILKASKYPLVADLFQNEKDTVPPTPTGKSKISVRPAKPALKSANKEHKK------- 625
            |.:.:..::..|.|:..|:.::|                     |..|.:|...|..|       
  Fly   599 DPLNDTVVDQFKKSQNKLLIEIF---------------------ADHAGQSGGGEQAKGGRGKKG 642

 Frog   626 ----TVGHQFRNSLHLLMETLNATTPHYVRCIKPNDYKESFSFDPKRAVQQLRACGVLETIRISA 686
                ||...::..|:.||.||.:|.||:||||.||:.|:....|....:.||...||||.|||..
  Fly   643 GGFATVSSAYKEQLNSLMTTLRSTQPHFVRCIIPNEMKQPGVVDAHLVMHQLTCNGVLEGIRICR 707

 Frog   687 AGYPSRWTYHDFFNRYRVLMKKKDISLGDKKVICKNVLENLIKD--------------PDKFQFG 737
            .|:|:|..|.||..||              |::|..:|:.:.||              .|:::.|
  Fly   708 KGFPNRMMYPDFKMRY--------------KIMCPKLLQGVEKDKKATEIIIKFIDLPEDQYRLG 758

 Frog   738 RTKIFFRAGQVAYLEKLRADKFRAATIMIQKTVRGWLQRVKYRRMKKAAVTIQRYTRGHLARRLA 802
            .||:|||||.:..:|:.|.:  |...||      .|:               |.:.||:|:|   
  Fly   759 NTKVFFRAGVLGQMEEFRDE--RLGKIM------SWM---------------QAWARGYLSR--- 797

 Frog   803 LHLRMTKAAITFQKQFRMIRVYRGFQKTRKAAVTIQSYTRGMFVRRAYRQLLEQHKAAIIQKHWR 867
                                  :||:|.::..|.::...|.:   |.|.||             |
  Fly   798 ----------------------KGFKKLQEQRVALKVVQRNL---RKYLQL-------------R 824

 Frog   868 GWRARKLFSKFR-----------------SAAVVIQCYFRRMKARRELKQLK---IEARTA---- 908
            .|...||:.|.:                 .|....:.:...:|.|:||:.|.   :..:||    
  Fly   825 TWPWYKLWQKVKPLLNVSRIEDEIARLEEKAKKAEELHAAEVKVRKELEALNAKLLAEKTALLDS 889

 Frog   909 ------------EHFKKLSV---GMENKVVQLQRKLDEQNKEQKDLKEQLVSATSTHAVEVEKLQ 958
                        |...||:.   .:||::..:|.:|    .:::|.:.||.........|:..|:
  Fly   890 LSGEKGALQDYQERNAKLTAQKNDLENQLRDIQERL----TQEEDARNQLFQQKKKADQEISGLK 950

 Frog   959 KELE----KQRQAQQD----ENQLTSLQQELEALREELAKAYSEKKVVEDT-------------- 1001
            |::|    ..::|:||    ::|:.:|..|:....|.:.|...|||:..:|              
  Fly   951 KDIEDLELNVQKAEQDKATKDHQIRNLNDEIAHQDELINKLNKEKKMQGETNQKTGEELQAAEDK 1015

 Frog  1002 ---LMNEKEQLLQRVSELEEENTNLKEEK------EELSNKI-------------ILRSEDEFTQ 1044
               |...|.:|.|.:.|||:   :|:.||      |:...|:             :.|::.|..|
  Fly  1016 INHLNKVKAKLEQTLDELED---SLEREKKVRGDVEKSKRKVEGDLKLTQEAVADLERNKKELEQ 1077

 Frog  1045 STIKENLE---IKKDLEEER---SRHQNLVKEYTRLEQRYDNLKEEVNIIKQQMPGHRRNPSNQS 1103
            :..:::.|   |...||:|:   .:||..:||   |:.|.:.|:|||...:|.    |.....|.
  Fly  1078 TIQRKDKELSSITAKLEDEQVVVLKHQRQIKE---LQARIEELEEEVEAERQA----RAKAEKQR 1135

 Frog  1104 SLESDSNYPSISTSEIGDTEDTIKEVEEAG--LEKAAMDMSLFLKLQKRVRELELERKKLQSQLD 1166
            :                   |..:|:||.|  ||:|....|..::|.|: ||.||  .||:..|:
  Fly  1136 A-------------------DLARELEELGERLEEAGGATSAQIELNKK-REAEL--SKLRRDLE 1178

 Frog  1167 KKE-QQENKKSQVIDTTNEVIADRDTDI-AYNNLKRQELESEN---------------------- 1207
            :.. |.|:..:.:....|:.:|:....: ..|.||.:..:.:|                      
  Fly  1179 EANIQHESTLANLRKKHNDAVAEMAEQVDQLNKLKAKAEKEKNEYYGQLNDLRAGVDHITNEKAA 1243

 Frog  1208 -----KKLKNDLNEMR-------KTIADGAVDGSSEEARI--AMLLNQLKSAHEELDVRKEEVLM 1258
                 |:|::.|||::       :|:.|  .|.|.::..|  :.||.||:.|..::....:..:.
  Fly  1244 QEKIAKQLQHTLNEVQSKLDETNRTLND--FDASKKKLSIENSDLLRQLEEAESQVSQLSKIKIS 1306

 Frog  1259 LRTQI--VKAAQQKESERIMSSEASWPNSNKEMD------EDDA---IEAYHGVCETNRKTQDW- 1311
            |.||:  .|....:||....:....:.|...::|      |::|   .:....:.:.|.:.|.| 
  Fly  1307 LTTQLEDTKRLADEESRERATLLGKFRNLEHDLDNLREQVEEEAEGKADLQRQLSKANAEAQVWR 1371

 Frog  1312 GYLNEDG-----ELGLAYQGLKQVARLLEAQ------------LQAQSRQHDEEVEILTSHID-- 1357
            .....||     ||..|.:.|:  |||.||:            |:...::...|||.|...:|  
  Fly  1372 SKYESDGVARSEELEEAKRKLQ--ARLAEAEETIESLNQKCIGLEKTKQRLSTEVEDLQLEVDRA 1434

 Frog  1358 -SLKEELEKQQQVL--------LQALQLSPE--------------------AQVEFGLQHEITRL 1393
             ::....||:|:..        |:...|:.|                    |..|...|.|..|.
  Fly  1435 NAIANAAEKKQKAFDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEGQEQLEAVRR 1499

 Frog  1394 TNENL--DLKELLE----------KSEKNEKKLKKQLKTYMKKGQDSEDVVQTERKPELTRQVTV 1446
            .|:||  ::|:||:          :.||..|:|:.:........:::|..::.|....|..|:.:
  Fly  1500 ENKNLADEVKDLLDQIGEGGRNIHEIEKARKRLEAEKDELQAALEEAEAALEQEENKVLRAQLEL 1564

 Frog  1447 QRIEKDFQGMLEYYKEEEPLLVRNLIIDVKPEQMSSMVPCLPAYILFMCIRHADYINDDQKVHSL 1511
            .::.::....::..:||.....:|     ....:.||...|.|        .|....:..::...
  Fly  1565 SQVRQEIDRRIQEKEEEFENTRKN-----HQRALDSMQASLEA--------EAKGKAEALRMKKK 1616

 Frog  1512 LTSTINGIKKVL---KKHHSEFQITSFWLSNSSRLLHCLK---------QYSGDEGFMTSNSPKQ 1564
            |.:.||.::..|   .|.::|.|      .|..|....||         |.:.|:........::
  Fly  1617 LEADINELEIALDHANKANAEAQ------KNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER 1675

 Frog  1565 NEHCLRNFDLTEYRQVLSDLSIQIYQQMIKIAETHMQPMIVSAMLETESIQG----LSGVKQTGY 1625
            ..:.|:| :|.|.|.:|........|...::|:.|.|...|||  :..||..    |....||.:
  Fly  1676 RANALQN-ELEESRTLLEQADRGRRQAEQELADAHEQLNEVSA--QNASISAAKRKLESELQTLH 1737

 Frog  1626 RKRTSSMADGDNS--YSLEAVIRQLNTFNSIMC--DHGLDPE----IIQQVFKQLFYMINAVTLN 1682
            ......:.:..||  .:.:|::......:.:..  ||....|    .::|..|:|...::....|
  Fly  1738 SDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEAN 1802

 Frog  1683 NLLLRKDVCSWSTGMQLRYNISQLEEWLRG---------KNLHPSGAA---------------QT 1723
            .|...|...     .:|...:.:||..|.|         |||..|...               :.
  Fly  1803 ALKGGKKAI-----QKLEQRVRELENELDGEQRRHADAQKNLRKSERRVKELSFQSEEDRKNHER 1862

 Frog  1724 MEPLI-QAAQLLQLKKKTEEDAEAICSLCTALTTQQIVKILNLYTPVNEFEERVTVS 1779
            |:.|: :..|.::..|:..|:||.|.:|       .:.|.......:.|.|||..::
  Fly  1863 MQDLVDKLQQKIKTYKRQIEEAEEIAAL-------NLAKFRKAQQELEEAEERADLA 1912

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
myo5bXP_031750785.1 MYSc_Myo5 81..744 CDD:276831 269/710 (38%)
IQ 758..780 CDD:197470 4/21 (19%)
IQ 781..800 CDD:197470 4/18 (22%)
IQ 855..875 CDD:197470 3/19 (16%)
Smc 895..>1217 CDD:224117 95/424 (22%)
Smc 1123..>1458 CDD:224117 96/446 (22%)
Myo5b_CBD 1461..1832 CDD:271261 74/368 (20%)
MhcNP_001162991.1 Myosin_N 36..73 CDD:280832 11/37 (30%)
MYSc 81..777 CDD:214580 278/747 (37%)
MYSc_Myh1_insects_crustaceans 100..765 CDD:276874 269/710 (38%)
Myosin_tail_1 842..1897 CDD:279860 233/1128 (21%)
V_Alix_like 1557..1877 CDD:187408 65/346 (19%)
ATP-synt_B <1671..1771 CDD:304375 21/102 (21%)
TMPIT 1739..>1825 CDD:285135 15/90 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000014
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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