DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rnf150 and Rnf150

DIOPT Version :9

Sequence 1:NP_001135553.1 Gene:rnf150 / 100216098 XenbaseID:XB-GENE-5993052 Length:427 Species:Xenopus tropicalis
Sequence 2:NP_001178022.1 Gene:Rnf150 / 364983 RGDID:1304572 Length:437 Species:Rattus norvegicus


Alignment Length:438 Identity:359/438 - (81%)
Similarity:391/438 - (89%) Gaps:12/438 - (2%)


- Green bases have known domain annotations that are detailed below.


 Frog     1 MAMSLIQACRSLALSTWLLSFCFVHLLCLDFTVAEKEEWYTAFVNITYTDPLS----------HQ 55
            |.|||||||||||||||||||||||||||||||||||||||||||||||:|.|          .:
  Rat     1 MTMSLIQACRSLALSTWLLSFCFVHLLCLDFTVAEKEEWYTAFVNITYTEPESGAAVAGGGGGAE 65

 Frog    56 WRTEKSECGRYGEHSLKQDAWGLAVMPSSPQDRLACDPATKFSVPANASRWVALIPKGNCTYRDK 120
            ..|||||||||||||.||||.|..||.||..|||||||.|||:.||:...|:|||||||||||||
  Rat    66 LHTEKSECGRYGEHSPKQDARGEVVMASSVHDRLACDPNTKFAAPAHGKHWIALIPKGNCTYRDK 130

 Frog   121 IKHAALQNASAVLIYNVGSSNANETITMPHPGIEDIVAIMIPEPKGREIATLLERNINVTIYITI 185
            |::|.|||||||:|:||| ||.||||||||.|:|||||||||||||:|:.:|||||:.||:||||
  Rat   131 IRNAFLQNASAVVIFNVG-SNTNETITMPHAGVEDIVAIMIPEPKGKELVSLLERNVTVTMYITI 194

 Frog   186 GTRNLQKYVSRTSVVFVSISFIVLMIISLAWLVFYYIQRFRYANARDRNQRRLGDAAKKAISKLQ 250
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Rat   195 GTRNLQKYVSRTSVVFVSISFIVLMIISLAWLVFYYIQRFRYANARDRNQRRLGDAAKKAISKLQ 259

 Frog   251 VRTIKKGDKETEPEFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWLLDHRTCPMCKMNILKA 315
            ||||:|||||||.:|||||||||||||:|||||||||||||||||||||||||||||||||||||
  Rat   260 VRTIRKGDKETESDFDNCAVCIEGYKPSDVVRILPCRHLFHKSCVDPWLLDHRTCPMCKMNILKA 324

 Frog   316 LGIPPNADCLDDIPPDFEGSV-GPPTNQITGASDVTVNESSVGIDPSVRTVGVLQVIQDAESLPQ 379
            |||||||||:||:|.|||||: ||||||||||||.|||||||.:||:|||||.|||:||.:..||
  Rat   325 LGIPPNADCMDDLPIDFEGSLGGPPTNQITGASDTTVNESSVTLDPAVRTVGALQVVQDPDPAPQ 389

 Frog   380 VGEVSYTASSEQEPAVSSDSDISLIMAVDVGLSDVDLSTDQDCDEAKS 427
            .||..:|.:|:||||||||||||||||::||||||:|||||||:|.||
  Rat   390 EGEAIFTTNSDQEPAVSSDSDISLIMALEVGLSDVELSTDQDCEEVKS 437

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rnf150NP_001135553.1 PA_GRAIL_like 45..183 CDD:239037 100/147 (68%)
UPF0233 <197..>222 CDD:299753 24/24 (100%)
zf-RING_2 266..309 CDD:290367 41/42 (98%)
Rnf150NP_001178022.1 PA_GRAIL_like 45..192 CDD:239037 100/147 (68%)
UPF0233 <206..>231 CDD:299753 24/24 (100%)
zf-RING_2 275..318 CDD:290367 41/42 (98%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 187 1.000 Domainoid score I15692
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H33783
Inparanoid 1 1.050 724 1.000 Inparanoid score I4745
OMA 1 1.010 - - QHG50669
OrthoDB 1 1.010 - - D1487241at2759
OrthoFinder 1 1.000 - - FOG0000832
OrthoInspector 1 1.000 - - oto204748
Panther 1 1.100 - - LDO PTHR22765
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X295
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1212.080

Return to query results.
Submit another query.