DRSC/TRiP Functional Genomics Resources

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Protein Alignment rnf150 and H10E21.5

DIOPT Version :9

Sequence 1:NP_001135553.1 Gene:rnf150 / 100216098 XenbaseID:XB-GENE-5993052 Length:427 Species:Xenopus tropicalis
Sequence 2:NP_497129.1 Gene:H10E21.5 / 175169 WormBaseID:WBGene00019185 Length:473 Species:Caenorhabditis elegans


Alignment Length:392 Identity:126/392 - (32%)
Similarity:187/392 - (47%) Gaps:109/392 - (27%)


- Green bases have known domain annotations that are detailed below.


 Frog    24 VHLLCLD-----------FTVAEKEEWYTAFVNITYTDPLSHQWRTEKSE----CGRYGEHSLKQ 73
            |.|.|:|           .|.:.|:...:.|:. .|||..:...:.:.|:    |....::.|.:
 Worm    30 VKLQCIDSEEVYGTLQTELTFSNKDGGGSTFLP-AYTDLCAPDMKFDDSQRVFFCKNCIQNCLSR 93

 Frog    74 DAWGLAVMPSSPQDRLACDPATKFSVPANASRWVAL-IPKGNCTYRDKIKHAALQNASAVLIYNV 137
                   :.::|::.|.   ......|.|...|..: .|..|      |:.:..|       .||
 Worm    94 -------VETAPKNILI---VADVKAPNNRVSWFHVQTPVSN------IRESGKQ-------CNV 135

 Frog   138 GSSNANETITMPHPGIEDIVAIMIPEPKGREIATLLERNINVTIYITIGTRNLQKYVSRTSVVFV 202
            .:|||.::                ||    |.:|...|:.                 |:|||:||
 Worm   136 ENSNAMQS----------------PE----ETSTDALRSF-----------------SKTSVLFV 163

 Frog   203 SISFIVLMIISLAWLVFYYIQRFRYANARDRNQRRLGDAAKKAISKLQVRTIKKGDKETEPEFDN 267
            |||||:||:||||||||||:||||||:|:||.||||.:||:||::::...||..|  .|:....:
 Worm   164 SISFIILMVISLAWLVFYYVQRFRYAHAKDRLQRRLFNAARKALTRIPTMTITPG--MTQELQSD 226

 Frog   268 CAVCIEGYKPNDVVRILPCRHLFHKSCVDPWLLDHRTCPMCKMNILKALGIPPNADCLDDIPPDF 332
            ||||::.|:..||:|:|||:|::||||:|||||:||||||||.:|||..|.      .:||..|.
 Worm   227 CAVCLDPYQLQDVIRLLPCKHIYHKSCIDPWLLEHRTCPMCKNDILKHFGY------WNDIRNDI 285

 Frog   333 EGSVGPPTNQITGASDVTVNESSVGIDPSVRTVGVLQVIQDAESLPQVGEVSYTASSEQEPAVSS 397
            :    .|||....|.|.|:.               |::.:.....|....:|..|:|:     :|
 Worm   286 Q----MPTNSRGIADDFTIR---------------LELGEQEHQAPSADVISPEANSD-----TS 326

 Frog   398 DS 399
            ||
 Worm   327 DS 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rnf150NP_001135553.1 PA_GRAIL_like 45..183 CDD:239037 25/142 (18%)
UPF0233 <197..>222 CDD:299753 21/24 (88%)
zf-RING_2 266..309 CDD:290367 27/42 (64%)
H10E21.5NP_497129.1 HRD1 <150..325 CDD:227568 92/223 (41%)
RING-H2_GRAIL 226..273 CDD:319582 30/46 (65%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 84 1.000 Domainoid score I5695
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000832
OrthoInspector 1 1.000 - - otm21426
Panther 1 1.100 - - O PTHR22765
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3602
SonicParanoid 1 1.000 - - X295
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.040

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