DRSC/TRiP Functional Genomics Resources

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Protein Alignment rnf128 and gol

DIOPT Version :9

Sequence 1:XP_012824820.2 Gene:rnf128 / 100145171 XenbaseID:XB-GENE-877067 Length:403 Species:Xenopus tropicalis
Sequence 2:NP_001163300.1 Gene:gol / 38006 FlyBaseID:FBgn0004919 Length:601 Species:Drosophila melanogaster


Alignment Length:338 Identity:110/338 - (32%)
Similarity:172/338 - (50%) Gaps:48/338 - (14%)


- Green bases have known domain annotations that are detailed below.


 Frog    11 LPFPCLPALLLLNLSL------------------TGADTLWTANVNYSYVYDNRTYGEEG----- 52
            |.||.....|:..:|:                  :|.:.....:| |:|.:.|.:|.|.|     
  Fly    22 LTFPATTTTLVAAMSIANQDLERYFRPGNGTHSFSGMEDRIAVDV-YNYAFLNWSYVEHGNMLCN 85

 Frog    53 -----EIGVFGQDSPIERAAGLVVLPKSERTFT---AC----KDNTNFSVPHNWNGPWIALILRG 105
                 |...:|:...:.....|:.:..:: .|:   ||    :......:|.. ...||||: |.
  Fly    86 MEFAQEQARYGEGKVLNVTGRLIHITATD-NFSDDYACTPYIRGTLGAPIPDK-GETWIALV-RR 147

 Frog   106 GGCTFTEKINRAAERGARAVVVYNNGMDNEVFEMSHPG-TKDTVAIMIGNIKGNEIVEVIKGGMQ 169
            |.|||.||:....::.|..|::||:....::.:|...| |::..|::.....|.::...:..|..
  Fly   148 GRCTFEEKVKHVYQQNAAGVIIYNDKQVMQLEKMQIKGKTRNIAAVITYQNIGQDLSLTLDKGYN 212

 Frog   170 VMMVIEVGRKHG----SWINHYSIFFVSVSFFIVTAATVGYFIFYSARRWRLTRAQNKKMKQLKA 230
            |.:.|..||: |    |.:|..|:.|||:||.::...::.:.|||..:|:|..:|::::.:.|.:
  Fly   213 VTISIIEGRR-GVRTISSLNRTSVLFVSISFIVLMIISLVWLIFYYIQRFRYMQAKDQQSRNLCS 276

 Frog   231 EAKKAIGKLQLRTIKQGD-KVLGPDGDSCAVCIEPYKPSDVVRILTCNHFFHKNCIDPWLLEHRT 294
            ..||||.|:..:|.|..| |.|  |.|.||:|||.|||:|.:|||.|.|.||||||||||:||||
  Fly   277 VTKKAIMKIPTKTGKFSDEKDL--DSDCCAICIEAYKPTDTIRILPCKHEFHKNCIDPWLIEHRT 339

 Frog   295 CPMCKCDILKSLG 307
            |||||.|:||..|
  Fly   340 CPMCKLDVLKFYG 352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rnf128XP_012824820.2 PA_GRAIL_like 38..174 CDD:239037 35/153 (23%)
COG5540 <208..302 CDD:227827 52/94 (55%)
RING-H2_RNF128_like 256..304 CDD:319716 35/47 (74%)
golNP_001163300.1 PA_GRAIL_like 73..217 CDD:239037 33/146 (23%)
UPF0233 226..>258 CDD:299753 11/31 (35%)
zf-RING_2 301..344 CDD:290367 32/42 (76%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 87 1.000 Domainoid score I7883
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1487241at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm49035
Panther 1 1.100 - - O PTHR22765
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X295
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.020

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