DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC6 and clr3

DIOPT Version :10

Sequence 1:XP_047297659.1 Gene:HDAC6 / 10013 HGNCID:14064 Length:1261 Species:Homo sapiens
Sequence 2:NP_595104.1 Gene:clr3 / 2540821 PomBaseID:SPBC800.03 Length:687 Species:Schizosaccharomyces pombe


Alignment Length:545 Identity:195/545 - (35%)
Similarity:274/545 - (50%) Gaps:88/545 - (16%)


- Green bases have known domain annotations that are detailed below.


Human   473 ALEALEPFWEVLVRSTETVERDNMEEDNVEESEEEGPWEPPVLPILTWPVLQSRTGLVYDQNMMN 537
            |:..:.| |.:|:.:.:.:.......:|  ||.|...             :..::||.||..|..
pombe    19 AVNTVTP-WSILLTNNKPMSGSENTLNN--ESHEMSQ-------------ILKKSGLCYDPRMRF 67

Human   538 HCNLWD-SHHPEVPQRILRIMCRLEELGLAGRC-------LTLTPRPATEAELLTCHSAEYVGHL 594
            |..|.: ..|||.|:|:||:...:::.|.....       |.:..|.||..|||..||.|....:
pombe    68 HATLSEVDDHPEDPRRVLRVFEAIKKAGYVSNVPSPSDVFLRIPAREATLEELLQVHSQEMYDRV 132

Human   595 RATEKMKTRELHRESSNFDSIYICPSTFACAQLATGAACRLVEAVLSGEVLNGAAVVRPPGHHAE 659
            ..||||...:|.......||:|....:..||:||.|:|.....||::|:|.|..|||||||||||
pombe   133 TNTEKMSHEDLANLEKISDSLYYNNESAFCARLACGSAIETCTAVVTGQVKNAFAVVRPPGHHAE 197

Human   660 QDAACGFCFFNSVAVAARH-AQTISGHALRILIVDWDVHHGNGTQHMFEDDPSVLYVSLHRYDHG 723
            .....|||.||:|:|.||. .|.......|:||||||:|||||||..|.|||:|||||||||::|
pombe   198 PHKPGGFCLFNNVSVTARSMLQRFPDKIKRVLIVDWDIHHGNGTQMAFYDDPNVLYVSLHRYENG 262

Human   724 TFFPMGDEGASSQIGRAAGTGFTVNVAWNGPRMGDADYLAAWHRLVLPIAYEFNPELVLVSAGFD 788
            .|:|..:.|.:...|...|.|.|||:.|:...|||.||:.|:.|:|:|:||||:|:||:||.|||
pombe   263 RFYPGTNYGCAENCGEGPGLGRTVNIPWSCAGMGDGDYIYAFQRVVMPVAYEFDPDLVIVSCGFD 327

Human   789 AARGDPLGGCQVSPEGYAHLTHLLMGLASGRIILILEGGYNLTSISESMAACTRSLLGDPPPLL- 852
            ||.||.:|...::|..|||:|.:|||||.|::.:.|||||||.|||.|..|..:||||.||..| 
pombe   328 AAAGDHIGQFLLTPAAYAHMTQMLMGLADGKVFISLEGGYNLDSISTSALAVAQSLLGIPPGRLH 392

Human   853 -TLPRPPLSGALASITETIQVHRRYWRSLRVMKVEDREGPSSSKLVTKKAPQPAKPRLA--ERM- 913
             |...|.   |:|:|....::..:|||.:|....:                  |.|:.|  :|: 
pombe   393 TTYACPQ---AVATINHVTKIQSQYWRCMRPKHFD------------------ANPKDAHVDRLH 436

Human   914 ----TTREKKVLEAGMGKVTSASFGEESTPGQTNSETA----------VVALTQDQPSEAATGGA 964
                |.:.||:.|.  .|:|:.....:|.....|::..          ::.:..:.|        
pombe   437 DVIRTYQAKKLFED--WKITNMPILRDSVSNVFNNQVLCSSNFFQKDNLLVIVHESP-------- 491

Human   965 TLAQTISEAAIGGAMLGQTTSEEAV 989
                         .:||..|||..|
pombe   492 -------------RVLGNGTSETNV 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC6XP_047297659.1 HDAC6-dom1 145..481 CDD:212545 2/7 (29%)
HDAC6-dom2 531..881 CDD:212527 165/360 (46%)
zf-UBP 1179..1241 CDD:460464
clr3NP_595104.1 HDAC_Clr3 75..392 CDD:212542 151/316 (48%)
Arb2 435..677 CDD:401634 15/92 (16%)
Blue background indicates that the domain is not in the aligned region.

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