DRSC/TRiP Functional Genomics Resources

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Protein Alignment KDM4F and Kdm4b

DIOPT Version :10

Sequence 1:NP_001400684.1 Gene:KDM4F / 100129053 HGNCID:52413 Length:638 Species:Homo sapiens
Sequence 2:XP_030105461.1 Gene:Kdm4b / 193796 MGIID:2442355 Length:1124 Species:Mus musculus


Alignment Length:598 Identity:303/598 - (50%)
Similarity:368/598 - (61%) Gaps:97/598 - (16%)


- Green bases have known domain annotations that are detailed below.


Human     1 MKSVHSSPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAHRAGLAKVIPPKEWKARQMYDDIED 65
            |.|...|.||.|..||||.|||:||.|||.||||:||||||||||||:|||||||.||.||||:|
Mouse     1 MGSEDHSAQNPSCKIMTFRPTMDEFRDFNRYVAYIESQGAHRAGLAKIIPPKEWKPRQTYDDIDD 65

Human    66 ILIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYRHLANSKKYQTPPHQNFADLEQRYWKSHPGNP 130
            ::|..|:|||.:||.|:||||:.:||||.||:||.||||:||.||.||:|.|||::|||:.....
Mouse    66 VVIPAPIQQVVTGQSGLFTQYNIQKKAMTVGEYRRLANSEKYCTPRHQDFDDLERKYWKNLTFVS 130

Human   131 PIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDL 195
            |||||||||||:::...|||:|:|.||||::|:|||.:|||||||||||||||||||||||||||
Mouse   131 PIYGADISGSLYDDDVAQWNIGNLRTILDMVERECGTIIEGVNTPYLYFGMWKTTFAWHTEDMDL 195

Human   196 YSINYLHFGEPKTWYVVPPEHGQRLECLARELFPGNSRGCEGFLRHKVALISPTVLKKNGIPFNR 260
            ||||||||||||:||.:|||||:|||.||...|||:|:||:.|||||:.||||.:|||.||||:|
Mouse   196 YSINYLHFGEPKSWYAIPPEHGKRLERLAIGFFPGSSQGCDAFLRHKMTLISPIILKKYGIPFSR 260

Human   261 MTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKVASQCSCGEARVTFSMDAFVRIL 325
            :||||||||:||||||||||||||||||:.||||.|||||||||:||:|.:..|..|||.|||||
Mouse   261 ITQEAGEFMITFPYGYHAGFNHGFNCAESTNFATLRWIDYGKVATQCTCRKDMVKISMDVFVRIL 325

Human   326 QPESYELWKHRQDLTVVDYMEPRVAESQEPSNWREDIALRRAALGLRHLRNHIT----------- 379
            |||.||.||..:||||:|:..|....|.|.|:|    :..|.::..:.||..|:           
Mouse   326 QPERYEQWKQGRDLTVLDHTRPTALSSPELSSW----SASRTSIKAKLLRRQISVKESRPWRKAE 386

Human   380 ----SCPTRTVAP---RLCYNPKGGGTD--AVPGSAIQALETSAWVLPPSTGRWGPCRGCGRGR- 434
                ..|||...|   |....||....:  ..||.|...:.|           ....|||.||. 
Mouse   387 EERRREPTRRPGPASHRRRSQPKKSKPEESRSPGEATAGVST-----------LDEARGCSRGEA 440

Human   435 ------------GRGR--------GRGR-RPRELGTEETTVQSAAKRRLSVGTGSRAPGRKPQLQ 478
                        .:|.        |||: ||.:...::.|...::...||      ||   |.|.
Mouse   441 MPEDEEEEELLPSQGHEAEGVEEDGRGKPRPTKARNKKKTPSPSSPPLLS------AP---PALF 496

Human   479 FADEALTDKPAPLSGGLPHFAKASGCCCAPDLQPL----GPPLDPDEPMHPG------------- 526
            ..:|.|...|.|.|.|             |.:.|:    |||..|...:.||             
Mouse   497 PTEEVLRPPPQPKSPG-------------PAMGPMAAEGGPPPTPLNVVPPGAPVEEAEVRPRPI 548

Human   527 -PCLLSLDSTASS 538
             |.|..|..|:|:
Mouse   549 IPMLYVLPRTSST 561

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KDM4FNP_001400684.1 JmjN 15..55 CDD:128818 33/39 (85%)
JmjC 176..292 CDD:396791 93/115 (81%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 426..474 16/69 (23%)
Kdm4bXP_030105461.1 JmjN 15..56 CDD:128818 34/40 (85%)
JmjC 176..292 CDD:396791 93/115 (81%)
PHD_SF 680..814 CDD:473978
PHD_SF 823..932 CDD:473978
Tudor_JMJD2B_rpt1 945..998 CDD:410535
Tudor_SF 1002..1057 CDD:470623
Blue background indicates that the domain is not in the aligned region.

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