DRSC/TRiP Functional Genomics Resources

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Protein Alignment rnf145l and rbx1

DIOPT Version :9

Sequence 1:NP_001106467.1 Gene:rnf145l / 100127651 XenbaseID:XB-GENE-5921670 Length:679 Species:Xenopus tropicalis
Sequence 2:NP_593388.1 Gene:rbx1 / 2541897 PomBaseID:SPAC23H4.18c Length:107 Species:Schizosaccharomyces pombe


Alignment Length:50 Identity:13/50 - (26%)
Similarity:24/50 - (48%) Gaps:7/50 - (14%)


- Green bases have known domain annotations that are detailed below.


 Frog   529 DVCPICFQDMSGAVIT-------PCSHIFHGECLRKWLYVQDTCPICHQQ 571
            |:|..|..:...|...       .|:|.||..|:.:||..::.||:.:::
pombe    50 DLCIECQANTDSAAAQECTVAWGTCNHAFHFHCISRWLNTRNVCPLDNRE 99

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rnf145lNP_001106467.1 TRC8_N 5..500 CDD:290425
zf-rbx1 <528..569 CDD:289448 13/46 (28%)
zf-RING_2 529..569 CDD:290367 13/46 (28%)
rbx1NP_593388.1 APC11 19..107 CDD:227521 13/49 (27%)
zf-rbx1 20..97 CDD:289448 13/46 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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