DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rnf145l and SPBP4H10.07

DIOPT Version :9

Sequence 1:NP_001106467.1 Gene:rnf145l / 100127651 XenbaseID:XB-GENE-5921670 Length:679 Species:Xenopus tropicalis
Sequence 2:NP_596181.1 Gene:SPBP4H10.07 / 2541304 PomBaseID:SPBP4H10.07 Length:583 Species:Schizosaccharomyces pombe


Alignment Length:80 Identity:22/80 - (27%)
Similarity:33/80 - (41%) Gaps:14/80 - (17%)


- Green bases have known domain annotations that are detailed below.


 Frog   513 ISSLPMATLEQLRAHNDVCPICFQDMSGAV-------------ITPCSHIFHGECLRKWL-YVQD 563
            |...|:|:.:.|.....|.|....|....|             :..|:|.||.||:.:|| ..|:
pombe   498 IEKPPVASQKDLEKAGGVFPFSGTDERCLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQN 562

 Frog   564 TCPICHQQVKPLAET 578
            :||:|..:....|.|
pombe   563 SCPLCRTKGVASAST 577

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rnf145lNP_001106467.1 TRC8_N 5..500 CDD:290425
zf-rbx1 <528..569 CDD:289448 15/54 (28%)
zf-RING_2 529..569 CDD:290367 15/53 (28%)
SPBP4H10.07NP_596181.1 PHA03328 77..>156 CDD:223046
zf-rbx1 <522..568 CDD:289448 13/45 (29%)
RING 525..570 CDD:238093 13/44 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.