DRSC/TRiP Functional Genomics Resources

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Protein Alignment fus and caz

DIOPT Version :9

Sequence 1:XP_012809196.1 Gene:fus / 100038234 XenbaseID:XB-GENE-495119 Length:554 Species:Xenopus tropicalis
Sequence 2:NP_523365.2 Gene:caz / 32587 FlyBaseID:FBgn0285954 Length:399 Species:Drosophila melanogaster


Alignment Length:462 Identity:183/462 - (39%)
Similarity:226/462 - (48%) Gaps:119/462 - (25%)


- Green bases have known domain annotations that are detailed below.


 Frog   148 QQSSYGGQQQSSYGSQQGQSGYGSQQPSSYGQQQQSSYSQPQGYGQQQTQYSGGVPDVYDLFPAG 212
            ::..|||      ||.||.:.: :..|.:|.|....:                           |
  Fly     2 ERGGYGG------GSGQGYNNF-AVPPPNYQQMPNKT---------------------------G 32

 Frog   213 GYNQDSPSMGSGSYGGGSDQGGYGGQDRGRGRGGFGGRGGGGGGGAGGFDSRGRGSRG------- 270
            .||:..|:.|.        ||  ||.|.|.|..|.||.|.||||| |.::.||..|.|       
  Fly    33 NYNEPPPNYGK--------QG--GGYDSGSGHRGSGGSGNGGGGG-GSWNDRGGNSYGNGGASKD 86

 Frog   271 ----GRGGMGGGERGGFSKFGGPREGGGPPRHEMAEQDNSDNNTIFVQGLGENVTVESVADYFKQ 331
                |.||..||..|     ||...|||...::|..|:    :||||.|:..:.|.:.:..:|..
  Fly    87 SYNKGHGGYSGGGGG-----GGGGGGGGSGGNDMITQE----DTIFVSGMDPSTTEQDIETHFGA 142

 Frog   332 IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRR 396
            |||||.:|:|.:|.|.||.::|||..||||||::||..:|::||:||||::|:||.||||.|.|:
  Fly   143 IGIIKKDKRTMKPKIWLYKNKETGASKGEATVTYDDTNAAQSAIEWFDGRDFNGNAIKVSLAQRQ 207

 Frog   397 ADFNSRGGGNGRGRGRG--GGPMGRGGFGGPPGGSGSR------GGSGGYPSGGGG--------- 444
            .::|..|||.|.|.|||  ||..|.||.||..||.|.|      ||.|.|..||||         
  Fly   208 NNWNKGGGGGGGGGGRGGFGGRRGGGGGGGGGGGGGGRFDRGGGGGGGRYDRGGGGGGGGGGGNV 272

 Frog   445 QQRAGDWKCPNPSCENMNFSWRNECNQCKAPKPEGPGGPGGSHMGGDVIAGGFGDERRGGRGGFD 509
            |.|.|||||  .||.|.||:||||||:||.||.:..|..||   ||   .||:|.  .||.||:|
  Fly   273 QPRDGDWKC--NSCNNTNFAWRNECNRCKTPKGDDEGSSGG---GG---GGGYGG--GGGGGGYD 327

 Frog   510 RGGFRGRGG------DRGG-----------------FRGGRGGDRGGFGPGKMDSR--GDHRQD- 548
            ||..||.||      ||||                 |....||.|||.|.|..:.|  |..|.| 
  Fly   328 RGNDRGSGGGGYHNRDRGGNSQGGGGGGGGGGGYSRFNDNNGGGRGGRGGGGGNRRDGGPMRNDG 392

 Frog   549 -RRDRPY 554
             .|.|||
  Fly   393 GMRSRPY 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fusXP_012809196.1 RRM <298..>398 CDD:223796 47/99 (47%)
RRM_FUS_TAF15 307..392 CDD:240979 42/84 (50%)
zf-RanBP 447..474 CDD:279035 18/26 (69%)
cazNP_523365.2 RRM <118..>205 CDD:223796 44/90 (49%)
RRM_SARFH 122..204 CDD:240978 42/81 (52%)
zf-RanBP 275..304 CDD:279035 21/30 (70%)
RanBP2-type Zn finger 279..298 CDD:275375 14/20 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 90 1.000 Domainoid score I7662
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 268 1.000 Inparanoid score I2958
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1539664at2759
OrthoFinder 1 1.000 - - FOG0002238
OrthoInspector 1 1.000 - - otm48325
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4499
SonicParanoid 1 1.000 - - X712
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.090

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